6LR4
Molecular basis for inhibition of human gamma-secretase by small molecule
External Resource: Annotation
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_M28 | e6lr4A2 | A: a/b three-layered sandwiches | X: Phosphorylase/hydrolase-like | H: Zn-dependent exopeptidases (From Topology) | T: Zn-dependent exopeptidases | F: Peptidase_M28 | ECOD (1.6) |
A | M28_Nicastrin | e6lr4A3 | A: a/b three-layered sandwiches | X: The swivelling beta/beta/alpha domains | H: The swivelling beta/beta/alpha domain (From Topology) | T: The swivelling beta/beta/alpha domain | F: M28_Nicastrin | ECOD (1.6) |
A | KOG2657_like | e6lr4A1 | A: extended segments | X: Nicastrin transmembrane helix (From Topology) | H: Nicastrin transmembrane helix (From Topology) | T: Nicastrin transmembrane helix | F: KOG2657_like | ECOD (1.6) |
B | Presenilin | e6lr4B1 | A: alpha arrays | X: Presenilin family intramembrane aspartate proteases (From Topology) | H: Presenilin family intramembrane aspartate proteases (From Topology) | T: Presenilin family intramembrane aspartate proteases | F: Presenilin | ECOD (1.6) |
C | Aph-1 | e6lr4C1 | A: alpha bundles | X: Hypothetical protein RPA3313 (From Topology) | H: Hypothetical protein RPA3313 (From Topology) | T: Hypothetical protein RPA3313 | F: Aph-1 | ECOD (1.6) |
D | PEN-2 | e6lr4D1 | A: alpha bundles | X: Spectrin repeat-like | H: Gamma-secretase subunit PEN-2 (From Topology) | T: Gamma-secretase subunit PEN-2 | F: PEN-2 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05450 | Nicastrin large lobe (Nicastrin) | Nicastrin | - | Family | |
PF18266 | Nicastrin small lobe (Ncstrn_small) | Nicastrin small lobe | This domain is part of the protein Nicastrin, a component of gamma secretase present in Homo sapiens. Gamma-secretase is thought to contribute to Alzheimer's disease development by generating beta-amyloid peptides. This domain is the known as the sma ... | Domain | |
PF01080 | Presenilin (Presenilin) | Presenilin | - | Family | |
PF06105 | Aph-1 protein (Aph-1) | Aph-1 protein | - | Family | |
PF10251 | Presenilin enhancer-2 subunit of gamma secretase (PEN-2) | Presenilin enhancer-2 subunit of gamma secretase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR041084 | Nicastrin, small lobe | Domain | |
IPR008710 | Nicastrin | Family | |
IPR006639 | Presenilin/signal peptide peptidase | Family | |
IPR002031 | Peptidase A22A, presenilin 1 | Family | |
IPR042524 | Presenilin, C-terminal | Homologous Superfamily | |
IPR001108 | Peptidase A22A, presenilin | Family | |
IPR009294 | Gamma-secretase subunit Aph-1 | Family | |
IPR019379 | Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit | Family |
Pharos: Disease Associations Pharos Homepage Annotation
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Peptidase AD | Gamma-secretase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Intramembrane Proteases | γ-secretase with bound Semagacestat |