6MWF
Crystal structure of 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (IspF) Burkholderia pseudomallei in complex with ligand HGN-0459
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | d6mwfc1 | Alpha and beta proteins (a+b) | Bacillus chorismate mutase-like | IpsF-like | automated matches | automated matches | (Burkholderia pseudomallei 1710b ) [TaxId: 320372 ], | SCOPe (2.08) |
C | d6mwfc2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | (Burkholderia pseudomallei 1710b ) [TaxId: 320372 ], | SCOPe (2.08) |
A | d6mwfa_ | Alpha and beta proteins (a+b) | Bacillus chorismate mutase-like | IpsF-like | automated matches | automated matches | (Burkholderia pseudomallei 1710b ) [TaxId: 320372 ], | SCOPe (2.08) |
B | d6mwfb_ | Alpha and beta proteins (a+b) | Bacillus chorismate mutase-like | IpsF-like | automated matches | automated matches | (Burkholderia pseudomallei 1710b ) [TaxId: 320372 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | YgbB | e6mwfC1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology) | T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF | F: YgbB | ECOD (1.6) |
A | YgbB | e6mwfA1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology) | T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF | F: YgbB | ECOD (1.6) |
B | YgbB | e6mwfB1 | A: a+b three layers | X: Bacillus chorismate mutase-like | H: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (From Topology) | T: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF | F: YgbB | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02542 | YgbB family (YgbB) | YgbB family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036571 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily | Homologous Superfamily | |
IPR003526 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | Domain | |
IPR020555 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site | Conserved Site |