6O8F
Crystal structure of UvrB bound to duplex DNA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039981 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039982 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039981 | 3002019 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8039982 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UB2H_1 | e6o8fA1 | A: beta meanders | X: Colicin E3 ribonuclease domain-like | H: UvrB interaction domain (From Topology) | T: UvrB interaction domain | F: UB2H_1 | ECOD (1.6) |
A | Helicase_C_8 | e6o8fA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_8 | ECOD (1.6) |
A | ResIII | e6o8fA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ResIII | ECOD (1.6) |
B | UB2H_1 | e6o8fB3 | A: beta meanders | X: Colicin E3 ribonuclease domain-like | H: UvrB interaction domain (From Topology) | T: UvrB interaction domain | F: UB2H_1 | ECOD (1.6) |
B | Helicase_C_8 | e6o8fB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Helicase_C_8 | ECOD (1.6) |
B | ResIII | e6o8fB2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: ResIII | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12344 | Ultra-violet resistance protein B (UvrB) | Ultra-violet resistance protein B | - | Family | |
PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain | |
PF04851 | Type III restriction enzyme, res subunit (ResIII) | Type III restriction enzyme, res subunit | - | Family | |
PF17757 | UvrB interaction domain (UvrB_inter) | UvrB interaction domain | This domain is found in the UvrB protein where it interacts with the UvrA protein [2]. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR024759 | UvrB, YAD/RRR-motif-containing domain | Domain | |
IPR006935 | Helicase/UvrB, N-terminal | Domain | |
IPR041471 | UvrB, interaction domain | Domain | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR036876 | UVR domain superfamily | Homologous Superfamily | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR001943 | UVR domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR004807 | UvrABC system, subunit B | Family |