6OHT | pdb_00006oht

Structure of EBP and U18666A

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Gly_radical	e6ohtA1	A: alpha bundles	X: P-loop domains-like	H: Head decoration protein D (gpD, major capsid protein D)	T: Head decoration protein D (gpD, major capsid protein D)	F: Gly_radical	ECOD (develop294)
B	Hydrolase	e6ohtB1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Hydrolase	ECOD (develop294)
C	Hydrolase	e6ohtC1	A: alpha bundles	X: P-loop domains-like	H: DUF1107-like	T: DUF1107-like	F: Hydrolase	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF05241	EXPERA (EXPanded EBP superfamily) (EBP)	EXPERA (EXPanded EBP superfamily)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase	isomerase activity intramolecular oxidoreductase activity, transposing C=C bonds intramolecular oxidoreductase activity cholestenol delta-isomerase activity catalytic activity C-8 sterol isomerase activity cholesterol-5,6-oxide hydrolase activity ether hydrolase activity hydrolase activity, acting on ether bonds hydrolase activity identical protein binding protein binding binding steroid Delta-isomerase activity	developmental process multicellular organismal process bone maturation animal organ development developmental maturation multicellular organism development skeletal system development ossification anatomical structure maturation anatomical structure development ossification involved in bone maturation animal organ maturation bone development system development developmental process multicellular organismal process bone maturation animal organ development developmental maturation multicellular organism development skeletal system development ossification anatomical structure maturation anatomical structure development ossification involved in bone maturation animal organ maturation bone development system development secondary alcohol biosynthetic process cholesterol biosynthetic process via desmosterol small molecule biosynthetic process cholesterol biosynthetic process sterol metabolic process steroid metabolic process cholesterol metabolic process lipid biosynthetic process alcohol metabolic process primary metabolic process secondary alcohol metabolic process biosynthetic process sterol biosynthetic process alcohol biosynthetic process small molecule metabolic process metabolic process cellular process steroid biosynthetic process lipid metabolic process cholesterol biosynthetic process via lathosterol cellular developmental process hemopoiesis cell differentiation cell development	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle organelle envelope nuclear envelope nucleus endomembrane system membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle organelle envelope nuclear envelope nucleus endomembrane system nuclear membrane membrane organelle membrane endoplasmic reticulum organelle subcompartment endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR033118	EXPERA domain	Domain
A, B, C	IPR007905	Emopamil-binding protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	Pharos: Q15125	MEND syndrome chondrodysplasia punctata chondrodysplasia punctata 2, X-linked dominant Ovulation induction pancreatic intraductal papillary-mucinous neoplasm Pick disease psoriasis adenoma X-linked chondrodysplasia punctata breast cancer CHILD syndrome hydrocephalus invasive ductal breast carcinoma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia MEND syndrome chondrodysplasia punctata chondrodysplasia punctata 2, X-linked dominant Ovulation induction pancreatic intraductal papillary-mucinous neoplasm Pick disease psoriasis adenoma X-linked chondrodysplasia punctata breast cancer CHILD syndrome hydrocephalus invasive ductal breast carcinoma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia polydactyly schizophrenia X-linked chondrodysplasia punctata 2 depressive disorder hydrops fetalis large cell medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma peroxisomal disease subependymal giant cell astrocytoma arthrogryposis cataract female infertility intellectual disability medulloblastoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C	OPM	Transmembrane	Alpha-helical polytopic	Emopamil binding protein	Emopamil binding protein

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Sterol Isomerases	Emopamil-Binding Protein (EBP) in complex with U18666A

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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