6PNJ
Structure of Photosystem I Acclimated to Far-red Light
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
G | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094527 | 3000850 | SCOP2B (2022-06-29) |
A | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8094526 | 4002118 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8094527 | 3000850 | SCOP2 (2022-06-29) |
Y [auth a] | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8094527 | 3000850 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8093900 | 3000850 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8093900 | 3000850 | SCOP2B (2022-06-29) |
Z [auth b] | SCOP2 Family | Photosystem I subunits PsaA/PsaB | 8093899 | 4002118 | SCOP2 (2022-06-29) |
Z [auth b] | SCOP2 Superfamily | Photosystem I subunits PsaA/PsaB | 8093900 | 3000850 | SCOP2 (2022-06-29) |
AA [auth c] | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093754 | 3000020 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8093754 | 3000020 | SCOP2B (2022-06-29) |
N | SCOP2 Family | 7-Fe ferredoxin | 8093753 | 4001227 | SCOP2 (2022-06-29) |
N | SCOP2 Superfamily | 4Fe-4S ferredoxins | 8093754 | 3000020 | SCOP2 (2022-06-29) |
D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8094705 | 3000951 | SCOP2B (2022-06-29) |
O | SCOP2 Family | Photosystem I subunit PsaD | 8094704 | 4003498 | SCOP2 (2022-06-29) |
O | SCOP2 Superfamily | Photosystem I subunit PsaD | 8094705 | 3000951 | SCOP2 (2022-06-29) |
BA [auth d] | SCOP2B Superfamily | Photosystem I subunit PsaD | 8094705 | 3000951 | SCOP2B (2022-06-29) |
CA [auth e] | SCOP2B Superfamily | Electron transport accessory proteins | 8093902 | 3000325 | SCOP2B (2022-06-29) |
E | SCOP2 Family | Photosystem I accessory protein E (PsaE) | 8093901 | 4001749 | SCOP2 (2022-06-29) |
E | SCOP2 Superfamily | Electron transport accessory proteins | 8093902 | 3000325 | SCOP2 (2022-06-29) |
P | SCOP2B Superfamily | Electron transport accessory proteins | 8093902 | 3000325 | SCOP2B (2022-06-29) |
L | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8094158 | 3000870 | SCOP2B (2022-06-29) |
HA [auth l] | SCOP2 Family | Photosystem I reaction center subunit XI, PsaL | 8094157 | 4002135 | SCOP2 (2022-06-29) |
HA [auth l] | SCOP2 Superfamily | Photosystem I reaction center subunit XI, PsaL | 8094158 | 3000870 | SCOP2 (2022-06-29) |
U | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8094158 | 3000870 | SCOP2B (2022-06-29) |
IA [auth m] | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8094052 | 3000829 | SCOP2B (2022-06-29) |
M | SCOP2 Family | Subunit XII of photosystem I reaction centre, PsaM | 8094051 | 4002104 | SCOP2 (2022-06-29) |
M | SCOP2 Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8094052 | 3000829 | SCOP2 (2022-06-29) |
V | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8094052 | 3000829 | SCOP2B (2022-06-29) |
W | SCOP2 Family | Subunit PsaX of photosystem I reaction centre | 8094528 | 4002108 | SCOP2 (2022-06-29) |
W | SCOP2 Superfamily | Subunit PsaX of photosystem I reaction centre | 8094529 | 3000838 | SCOP2 (2022-06-29) |
X | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8094529 | 3000838 | SCOP2B (2022-06-29) |
JA [auth x] | SCOP2B Superfamily | Subunit PsaX of photosystem I reaction centre | 8094529 | 3000838 | SCOP2B (2022-06-29) |
DA [auth f] | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8095299 | 3000813 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8095299 | 3000813 | SCOP2B (2022-06-29) |
Q | SCOP2 Family | Subunit III of photosystem I reaction centre, PsaF | 8095298 | 4002091 | SCOP2 (2022-06-29) |
Q | SCOP2 Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8095299 | 3000813 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
G | PsaA_PsaB_C | e6pnjG2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
G | PsaA_PsaB_N | e6pnjG1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
A | PsaA_PsaB_C | e6pnjA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
A | PsaA_PsaB_N | e6pnjA2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
Y [auth a] | PsaA_PsaB_C | e6pnja1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
Y [auth a] | PsaA_PsaB_N | e6pnja2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
B | PsaA_PsaB_C | e6pnjB2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
B | PsaA_PsaB_N | e6pnjB1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
H | PsaA_PsaB_C | e6pnjH1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
H | PsaA_PsaB_N | e6pnjH2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
Z [auth b] | PsaA_PsaB_C | e6pnjb2 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: PsaA_PsaB_C | ECOD (1.6) |
Z [auth b] | PsaA_PsaB_N | e6pnjb1 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: PsaA_PsaB_N | ECOD (1.6) |
AA [auth c] | Fer4_21_1 | e6pnjc1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
C | Fer4_21_1 | e6pnjC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
N | Fer4_21_1 | e6pnjN1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: Fer4_21_1 | ECOD (1.6) |
D | PsaD | e6pnjD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
O | PsaD | e6pnjO1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
BA [auth d] | PsaD | e6pnjd1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: PsaD | ECOD (1.6) |
CA [auth e] | PSI_PsaE | e6pnje1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
E | PSI_PsaE | e6pnjE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
P | PSI_PsaE | e6pnjP1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PSI_PsaE | ECOD (1.6) |
FA [auth j] | PSI_PsaJ | e6pnjj1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
J | PSI_PsaJ | e6pnjJ1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
S | PSI_PsaJ | e6pnjS1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: PSI_PsaJ | ECOD (1.6) |
L | PsaL | e6pnjL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
HA [auth l] | PsaL | e6pnjl1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
U | PsaL | e6pnjU1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: PsaL | ECOD (1.6) |
IA [auth m] | PsaM | e6pnjm1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
M | PsaM | e6pnjM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
V | PsaM | e6pnjV1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: PsaM | ECOD (1.6) |
W | PsaX | e6pnjW1 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PsaX | ECOD (1.6) |
X | PsaX | e6pnjX1 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PsaX | ECOD (1.6) |
JA [auth x] | PsaX | e6pnjx1 | A: extended segments | X: Subunit PsaX of photosystem I reaction centre (From Topology) | H: Subunit PsaX of photosystem I reaction centre (From Topology) | T: Subunit PsaX of photosystem I reaction centre | F: PsaX | ECOD (1.6) |
DA [auth f] | PSI_PsaF | e6pnjf1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
F | PSI_PsaF | e6pnjF1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
Q | PSI_PsaF | e6pnjQ1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: PSI_PsaF | ECOD (1.6) |
EA [auth i] | PSI_8 | e6pnji1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
I | PSI_8 | e6pnjI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
R | PSI_8 | e6pnjR1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: PSI_8 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, G, Y [auth a] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
B, H, Z [auth b] | PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family |
AA [auth c], C, N | PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain |
BA [auth d], D, O | PF02531 | PsaD (PsaD) | PsaD | - | Family |
CA [auth e], E, P | PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain |
FA [auth j], J, S | PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
GA [auth k], K, T | PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family |
HA [auth l], L, U | PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family |
IA [auth m], M, V | PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family |
DA [auth f], F, Q | PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Chains | External Link | Comment |
---|---|---|
PDBTM | Annotated as membrane protein by PDBTM |