6PYT | pdb_00006pyt

CryoEM Structure of Pyocin R2 - precontracted - trunk


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
T [auth b]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
W [auth e]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
X [auth f]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
V [auth d]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
U [auth c]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
S [auth r]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
R [auth q]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
Q [auth p]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
P [auth o]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
O [auth n]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
N [auth a]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)
A [auth m]SCOP2B SuperfamilyT6SS-like 8101743 3000580 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth M]Ribosomal_L4e6pytM1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L4ECOD (develop294)
D [auth N]Ribosomal_L41e6pytN1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
E [auth O]Ribosomal_L41e6pytO1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
G [auth Q]Ribosomal_L41e6pytQ1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
H [auth R]Ribosomal_L41e6pytR1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
I [auth B]Ribosomal_L41e6pytB1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
J [auth C]Ribosomal_L41e6pytC1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
M [auth F]Ribosomal_L41e6pytF1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
L [auth E]Ribosomal_L41e6pytE1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
K [auth D]Ribosomal_L41e6pytD1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
F [auth P]Ribosomal_L41e6pytP1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
C [auth A]Ribosomal_L41e6pytA1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
T [auth b]Ribosomal_L41e6pytb1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
W [auth e]Ribosomal_L41e6pyte1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
X [auth f]Ribosomal_L41e6pytf1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
V [auth d]Ribosomal_L41e6pytd1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
U [auth c]Ribosomal_L41e6pytc1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
S [auth r]Ribosomal_L41e6pytr1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
R [auth q]Ribosomal_L41e6pytq1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
Q [auth p]Ribosomal_L41e6pytp1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
P [auth o]Ribosomal_L41e6pyto1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
O [auth n]Ribosomal_L41e6pytn1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
N [auth a]Ribosomal_L41e6pyta1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L41ECOD (develop294)
A [auth m]Ribosomal_L4e6pytm1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesT: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetasesF: Ribosomal_L4ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF17482Phage tail sheath C-terminal domain (Phage_sheath_1C)Phage tail sheath C-terminal domainThis entry represents the C-terminal domain in a variety of phage tail sheath proteins [4]. Domain
PF22671Tail sheath protein Gp18 domain III N-terminal region (Gp18_domIII_N)Tail sheath protein Gp18 domain III N-terminal regionThis entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti ...This entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti-parallel beta-strands plus six alpha-helices, which surround the beta-sheet.
Domain
PF04984Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)Phage tail sheath protein subtilisin-like domainThis entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure. Domain
PF04985Phage tail tube protein FII (Phage_tube)Phage tail tube protein FII- Family

InterPro: Protein Family Classification InterPro Database Homepage