6TM5
Cryo-EM structure of the Anaphase-promoting complex/Cyclosome, in complex with the Nek2A substrate at 3.9 angstrom resolution
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG1858_3rd | e6tm5A5 | A: beta sandwiches | X: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | H: 26S proteasome subunit Rpn2 C-terminal domain (From Topology) | T: 26S proteasome subunit Rpn2 C-terminal domain | F: KOG1858_3rd | ECOD (1.6) |
A | ANAPC1 | e6tm5A4 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC1 | ECOD (1.6) |
A | KOG1858_2nd | e6tm5A2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Proteasome/cyclosome (PC) repeat (From Topology) | T: Proteasome/cyclosome (PC) repeat | F: KOG1858_2nd | ECOD (1.6) |
A | KOG1858_1st | e6tm5A3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Anaphase-promoting complex subunit 1 first helical domain (From Topology) | T: Anaphase-promoting complex subunit 1 first helical domain | F: KOG1858_1st | ECOD (1.6) |
A | KOG1858_4th | e6tm5A1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: Anaphase-promoting complex subunit 1 second helical domain (From Topology) | T: Anaphase-promoting complex subunit 1 second helical domain | F: KOG1858_4th | ECOD (1.6) |
L | ANAPC10 | e6tm5L1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Galactose-binding domain-like | F: ANAPC10 | ECOD (1.6) |
N | ANAPC2 | e6tm5N5 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: ANAPC2 | ECOD (1.6) |
N | Cullin_4th | e6tm5N4 | A: alpha arrays | X: HTH | H: HTH | T: winged | F: Cullin_4th | ECOD (1.6) |
N | Cullin_2nd | e6tm5N1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: Cullin_2nd | ECOD (1.6) |
N | KOG2165 | e6tm5N3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG2165 | ECOD (1.6) |
N | Cullin_3rd | e6tm5N2 | A: a+b duplicates or obligate multimers | X: a+b domain in cullin-like proteins (From Topology) | H: a+b domain in cullin-like proteins (From Topology) | T: a+b domain in cullin-like proteins | F: Cullin_3rd | ECOD (1.6) |
O | Apc5_N | e6tm5O2 | A: alpha arrays | X: SHQ1 C-terminal domain-like | H: Anaphase-promoting complex subunit 5 N-terminal domain (From Topology) | T: Anaphase-promoting complex subunit 5 N-terminal domain | F: Apc5_N | ECOD (1.6) |
O | ANAPC5 | e6tm5O1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: ANAPC5 | ECOD (1.6) |
S [auth X] | TPR_19,ANAPC8 | e6tm5X1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_19,ANAPC8 | ECOD (1.6) |
T [auth Y] | TPR_11_9 | e6tm5Y1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_9 | ECOD (1.6) |
B | zf-rbx1 | e6tm5B1 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: zf-rbx1 | ECOD (1.6) |
C | KOG1155 | e6tm5C1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG1155 | ECOD (1.6) |
C | ANAPC8 | e6tm5C3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: ANAPC8 | ECOD (1.6) |
P | KOG1155 | e6tm5P1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: KOG1155 | ECOD (1.6) |
P | ANAPC8 | e6tm5P3 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: ANAPC8 | ECOD (1.6) |
F | TPR_11_7 | e6tm5F1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_7 | ECOD (1.6) |
H | TPR_11_7 | e6tm5H1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_7 | ECOD (1.6) |
I | ANAPC4_WD40 | e6tm5I2 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40 | ECOD (1.6) |
I | ANAPC4 | e6tm5I1 | A: alpha bundles | X: Four-helical up-and-down bundle | H: Helical bundle domain in anaphase-promoting complex subunit 4 (From Topology) | T: Helical bundle domain in anaphase-promoting complex subunit 4 | F: ANAPC4 | ECOD (1.6) |
J | TPR_11_7 | e6tm5J1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_7 | ECOD (1.6) |
K | TPR_11_7 | e6tm5K1 | A: alpha superhelices | X: Repetitive alpha hairpins | H: ARM repeat (From Topology) | T: ARM repeat | F: TPR_11_7 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
L | 2.60.120.260 | Mainly Beta | Sandwich | Jelly Rolls | Galactose-binding domain-like | CATH (utative) |
B | 3.30.40.10 | Alpha Beta | 2-Layer Sandwich | Herpes Virus-1 | Zinc/RING finger domain, C3HC4 (zinc finger) | CATH (utative) |
C | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (utative) |
P | 1.25.40.10 | Mainly Alpha | Alpha Horseshoe | Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat | Tetratricopeptide repeat domain | CATH (utative) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20518 | Anaphase-promoting complex subunit 1 middle domain (Apc1_MidN) | Anaphase-promoting complex subunit 1 middle domain | - | Repeat | |
PF18122 | Anaphase-promoting complex sub unit 1 C-terminal domain (APC1_C) | Anaphase-promoting complex sub unit 1 C-terminal domain | This is the C-terminal domain of chain A, also known as sub-unit 1, found in anaphase-promoting complex (APC/C) present in Homo sapiens. APC/C is an ubiquitin ligase that controls chromosome segregation and mitotic exit [1]. | Domain | |
PF21282 | APC1 beta sandwich domain (APC1_3rd) | APC1 beta sandwich domain | This domain is found close to the C-terminus of the APC1 protein which is a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the ce ... | Domain | |
PF03256 | Anaphase-promoting complex, subunit 10 (APC10) (ANAPC10) | Anaphase-promoting complex, subunit 10 (APC10) | - | Family | |
PF05839 | Apc13p protein (Apc13p) | Apc13p protein | - | Family | |
PF08672 | Anaphase promoting complex (APC) subunit 2 (ANAPC2) | Anaphase promoting complex (APC) subunit 2 | The anaphase promoting complex or cyclosome (APC2) is an E3 ubiquitin ligase which is part of the SCF family of ubiquitin ligases. Ubiquitin ligases catalyse the transfer of ubiquitin from the ubiquitin conjugating enzyme (E2), to the substrate prot ... | Domain | |
PF12862 | Anaphase-promoting complex subunit 5 (ANAPC5) | Anaphase-promoting complex subunit 5 | - | Repeat | |
PF21371 | Anaphase-promoting complex subunit 5, N-terminal domain (Apc5_N) | Anaphase-promoting complex subunit 5, N-terminal domain | This domain is found at the N-terminal end of Anaphase-promoting complex subunit 5 from humans (Apc5), a component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitos ... | Domain | |
S [auth X], T [auth Y] | PF13181 | Tetratricopeptide repeat (TPR_8) | Tetratricopeptide repeat | - | Repeat |
S [auth X], T [auth Y] | PF13432 | Tetratricopeptide repeat (TPR_16) | Tetratricopeptide repeat | - | Repeat |
PF12861 | Anaphase-promoting complex subunit 11 RING-H2 finger (zf-ANAPC11) | Anaphase-promoting complex subunit 11 RING-H2 finger | Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome [1]. The APC subunits are cullin family proteins with ubiquitin ligase activity [2]. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried ou ... | Domain | |
PF04049 | Anaphase promoting complex subunit 8 / Cdc23 (ANAPC8) | Anaphase promoting complex subunit 8 / Cdc23 | - | Repeat | |
PF15243 | Anaphase-promoting complex subunit 15 (ANAPC15) | Anaphase-promoting complex subunit 15 | - | Family | |
PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) | Anaphase-promoting complex, cyclosome, subunit 3 | - | Repeat | |
PF00515 | Tetratricopeptide repeat (TPR_1) | Tetratricopeptide repeat | - | Repeat | |
G, R [auth W] | PF10471 | Anaphase-promoting complex APC subunit CDC26 (ANAPC_CDC26) | Anaphase-promoting complex APC subunit CDC26 | - | Family |
PF12896 | Anaphase-promoting complex, cyclosome, subunit 4 (ANAPC4) | Anaphase-promoting complex, cyclosome, subunit 4 | Apc4 is one of the larger of the subunits of the anaphase-promoting complex or cyclosome. This family represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits. The anaphase-promoting complex is a multiprotein s ... | Domain | |
PF12894 | Anaphase-promoting complex subunit 4 WD40 domain (ANAPC4_WD40) | Anaphase-promoting complex subunit 4 WD40 domain | - | Repeat | |
PF12895 | Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) | Anaphase-promoting complex, cyclosome, subunit 3 | - | Repeat | |
PF13424 | Tetratricopeptide repeat (TPR_12) | Tetratricopeptide repeat | - | Repeat |