6TMK | pdb_00006tmk

Cryo-EM structure of Toxoplasma gondii mitochondrial ATP synthase dimer, composite model


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DB [auth g2]SCOP2B SuperfamilyATP synthase gamma subunit-like 8101910 3000451 SCOP2B (2022-06-29)
YB [auth g1]SCOP2 FamilyATP synthase gamma subunit-like 8101909 4000503 SCOP2 (2022-06-29)
YB [auth g1]SCOP2 SuperfamilyATP synthase gamma subunit-like 8101910 3000451 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CC [auth H1]Big_1e6tmkH11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
DC [auth I1]Big_1e6tmkI11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
EC [auth J1]Big_1e6tmkJ11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
HB [auth H2]Big_1e6tmkH21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
HC [auth M1]Big_1e6tmkM11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
IC [auth N1]Big_1e6tmkN11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
JB [auth J2]Big_1e6tmkJ21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
JC [auth O1]Big_1e6tmkO11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
KB [auth K2]Big_1e6tmkK21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
KC [auth P1]Big_1e6tmkP11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
LB [auth L2]Big_1e6tmkL21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
MB [auth M2]Big_1e6tmkM21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
NB [auth N2]Big_1e6tmkN21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
OB [auth O2]Big_1e6tmkO21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
PB [auth P2]Big_1e6tmkP21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
QB [auth Q2]Big_1e6tmkQ21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
LC [auth Q1]Big_1e6tmkQ11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
IB [auth I2]Big_1e6tmkI21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
GC [auth L1]Big_1e6tmkL11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
FC [auth K1]Big_1e6tmkK11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
BC [auth G1]Big_1e6tmkG11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
GB [auth G2]Big_1e6tmkG21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
AC [auth e1]Big_1e6tmke11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
FB [auth e2]Big_1e6tmke21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
EB [auth d2]Big_1e6tmkd21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
ZB [auth d1]Big_1e6tmkd11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
DB [auth g2]Big_1e6tmkg21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
YB [auth g1]Big_1e6tmkg11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
AB [auth B2]Big_1e6tmkB21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
CB [auth D2]Big_1e6tmkD21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
VB [auth B1]Big_1e6tmkB11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
WB [auth F1]Big_1e6tmkF11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
XB [auth D1]Big_1e6tmkD11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
BB [auth F2]Big_1e6tmkF21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
SB [auth A1]Big_1e6tmkA11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
UB [auth C1]Big_1e6tmkC11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
XA [auth A2]Big_1e6tmkA21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
ZA [auth C2]Big_1e6tmkC21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
YA [auth E2]Big_1e6tmkE21 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)
TB [auth E1]Big_1e6tmkE11 A: alpha bundlesX: cradle loop barrelH: N-terminal domain of poxinT: N-terminal domain of poxinF: Big_1ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
GA [auth U],
I [auth u]
ATPTG15- - -
FA [auth S],
H [auth s]
ATPTG13- - -
EA [auth J],
G [auth j]
subunit i/j- - -
DA [auth K],
F [auth k]
subunit a- - -
CA [auth O],
E [auth o]
subunit k- - -
BA [auth G],
D [auth g]
ATPTG5- - -
subunit c
BC [auth G1],
GB [auth G2]
Oligomycin sensitivity conferring protein (OSCP) -
AC [auth e1],
FB [auth e2]
ATP synthase subunit epsilon
AA [auth T],
C [auth t]
ATPTG14- - -
EB [auth d2],
ZB [auth d1]
ATP synthase subunit delta -
DB [auth g2],
YB [auth g1]
ATP synthase subunit gamma -
ATP synthase subunit beta
ATP synthase subunit alpha,subunit alpha -
RB [auth i1],
WA [auth i2]
Inhibitor of F1- - -
VA [auth A],
X [auth a]
subunit d
UA [auth W],
W [auth w]
ATPTG16- - -
TA [auth F],
V [auth f]
ATPTG4- - -
SA [auth N],
U [auth n]
ATPTG9- - -
RA [auth M],
T [auth m]
subunit 8- - -
B [auth i],
Z [auth I]
ATPTG7- - -
QA [auth D],
S [auth d]
ATPTG2- - -
PA [auth C],
R [auth c]
ATPTG1
OA [auth L],
Q [auth l]
ATPTG8- - -
NA [auth V],
P [auth v]
subunit f- - -
MA [auth P],
O [auth p]
ATPTG10- - -
LA [auth R],
N [auth r]
ATPTG12- - -
KA [auth B],
M [auth b]
subunit b- - -
JA [auth X],
L [auth x]
ATPTG17- - -
IA [auth E],
K [auth e]
ATPTG3- - -
HA [auth H],
J [auth h]
ATPTG6- - -
A [auth q],
Y [auth Q]
ATPTG11- - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR038662F1F0 ATP synthase subunit C superfamilyHomologous Superfamily
IPR020537ATP synthase, F0 complex, subunit C, DCCD-binding siteBinding Site
IPR000454ATP synthase, F0 complex, subunit CFamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
BC [auth G1],
GB [auth G2]
IPR000711ATPase, OSCP/delta subunitFamily
BC [auth G1],
GB [auth G2]
IPR026015F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamilyHomologous Superfamily
AC [auth e1],
FB [auth e2]
IPR036742ATP synthase, F1 complex, epsilon subunit superfamily, mitochondrialHomologous Superfamily
AC [auth e1],
FB [auth e2]
IPR006721ATP synthase, F1 complex, epsilon subunit, mitochondrialFamily
EB [auth d2],
ZB [auth d1]
IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalHomologous Superfamily
EB [auth d2],
ZB [auth d1]
IPR020546ATP synthase, F1 complex, delta/epsilon subunit, N-terminalDomain
EB [auth d2],
ZB [auth d1]
IPR001469ATP synthase, F1 complex, delta/epsilon subunitFamily
DB [auth g2],
YB [auth g1]
IPR023632ATP synthase, F1 complex, gamma subunit conserved siteConserved Site
DB [auth g2],
YB [auth g1]
IPR000131ATP synthase, F1 complex, gamma subunitFamily
DB [auth g2],
YB [auth g1]
IPR035968ATP synthase, F1 complex, gamma subunit superfamilyHomologous Superfamily
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
IPR050053ATPase alpha/beta chainsFamily
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
IPR055190ATP synthase A/B type, C-terminal domainDomain
IPR003593AAA+ ATPase domainDomain
IPR005722ATP synthase, F1 complex, beta subunitFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR038376ATP synthase, alpha subunit, C-terminal domain superfamilyHomologous Superfamily
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
IPR033732ATP synthase, F1 complex, alpha subunit nucleotide-binding domainDomain
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
IPR000793ATP synthase, alpha subunit, C-terminalDomain
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
IPR005294ATP synthase, F1 complex, alpha subunitFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
VA [auth A],
X [auth a]
IPR036228ATP synthase, F0 complex, subunit D superfamily, mitochondrialHomologous Superfamily
TA [auth F],
V [auth f]
IPR013766Thioredoxin domainDomain
TA [auth F],
V [auth f]
IPR036249Thioredoxin-like superfamilyHomologous Superfamily
RA [auth M],
T [auth m]
IPR056324Microprotein domain, apicomplexa 19Domain
PA [auth C],
R [auth c]
IPR036909Cytochrome c-like domain superfamilyHomologous Superfamily
PA [auth C],
R [auth c]
IPR002326Cytochrome c1Family
PA [auth C],
R [auth c]
IPR009056Cytochrome c-like domainDomain
PA [auth C],
R [auth c]
IPR021157Cytochrome c1, transmembrane anchor, C-terminalHomologous Superfamily
MA [auth P],
O [auth p]
IPR049262ATPTG10-like domainDomain