6U5J | pdb_00006u5j

CryoEM Structure of Pyocin R2 - postcontracted - collar

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth o]	G-alpha	e6u5jo1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
W [auth p]	G-alpha	e6u5jp1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
V [auth q]	G-alpha	e6u5jq1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
U [auth r]	G-alpha	e6u5jr1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
T [auth n]	G-alpha	e6u5jn1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
S [auth m]	G-alpha	e6u5jm1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
R [auth i]	G-alpha	e6u5ji1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
Q [auth j]	G-alpha	e6u5jj1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
P [auth k]	G-alpha	e6u5jk1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
O [auth l]	G-alpha	e6u5jl1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
N [auth h]	G-alpha	e6u5jh1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
M [auth g]	G-alpha	e6u5jg1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
L [auth f]	G-alpha	e6u5jf1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
K [auth e]	G-alpha	e6u5je1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
J [auth d]	G-alpha	e6u5jd1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
I [auth c]	G-alpha	e6u5jc1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
H [auth b]	G-alpha	e6u5jb1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)
B [auth a]	G-alpha	e6u5ja1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: G-alpha	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B], D [auth C], E [auth D], F [auth E], A, C [auth B], D [auth C], E [auth D], F [auth E], G [auth F]	PF22671	Tail sheath protein Gp18 domain III N-terminal region (Gp18_domIII_N)	Tail sheath protein Gp18 domain III N-terminal region	This entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti ...	This entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti-parallel beta-strands plus six alpha-helices, which surround the beta-sheet.	Domain
A, C [auth B], D [auth C], E [auth D], F [auth E], A, C [auth B], D [auth C], E [auth D], F [auth E], G [auth F]	PF04984	Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)	Phage tail sheath protein subtilisin-like domain	This entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth a], H [auth b], I [auth c], J [auth d], K [auth e], B [auth a], H [auth b], I [auth c], J [auth d], K [auth e], L [auth f], M [auth g], N [auth h], O [auth l], P [auth k], Q [auth j], R [auth i], S [auth m], T [auth n], U [auth r], V [auth q], W [auth p], X [auth o]	IPR052042	Tail sheath structural protein	Family
B [auth a], H [auth b], I [auth c], J [auth d], K [auth e], B [auth a], H [auth b], I [auth c], J [auth d], K [auth e], L [auth f], M [auth g], N [auth h], O [auth l], P [auth k], Q [auth j], R [auth i], S [auth m], T [auth n], U [auth r], V [auth q], W [auth p], X [auth o]	IPR020287	Tail sheath protein, C-terminal domain	Domain
B [auth a], H [auth b], I [auth c], J [auth d], K [auth e], B [auth a], H [auth b], I [auth c], J [auth d], K [auth e], L [auth f], M [auth g], N [auth h], O [auth l], P [auth k], Q [auth j], R [auth i], S [auth m], T [auth n], U [auth r], V [auth q], W [auth p], X [auth o]	IPR054564	Tail sheath protein Gp18-like, domain III N-terminal region	Domain
B [auth a], H [auth b], I [auth c], J [auth d], K [auth e], B [auth a], H [auth b], I [auth c], J [auth d], K [auth e], L [auth f], M [auth g], N [auth h], O [auth l], P [auth k], Q [auth j], R [auth i], S [auth m], T [auth n], U [auth r], V [auth q], W [auth p], X [auth o]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.