6U5K

CryoEM Structure of Pyocin R2 - postcontracted - baseplate


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth a]Phage_sheath_1Ce6u5ka1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
A [auth a]Phage_sheath_1e6u5ka2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
AB [auth v]Phage_sheath_1Ce6u5kv1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
AB [auth v]Phage_sheath_1e6u5kv2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
BB [auth u]Phage_sheath_1Ce6u5ku2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
BB [auth u]Phage_sheath_1e6u5ku1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
EA [auth g]Phage_sheath_1Ce6u5kg1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
EA [auth g]Phage_sheath_1e6u5kg2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
GA [auth h]Phage_sheath_1Ce6u5kh2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
GA [auth h]Phage_sheath_1e6u5kh1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
HA [auth l]Phage_sheath_1Ce6u5kl1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
HA [auth l]Phage_sheath_1e6u5kl2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
IA [auth k]Phage_sheath_1Ce6u5kk1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
IA [auth k]Phage_sheath_1e6u5kk2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
JA [auth j]Phage_sheath_1Ce6u5kj2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
JA [auth j]Phage_sheath_1e6u5kj1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
K [auth b]Phage_sheath_1Ce6u5kb2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
K [auth b]Phage_sheath_1e6u5kb1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
KA [auth i]Phage_sheath_1Ce6u5ki1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
KA [auth i]Phage_sheath_1e6u5ki2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
L [auth f]Phage_sheath_1Ce6u5kf1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
L [auth f]Phage_sheath_1e6u5kf2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
M [auth e]Phage_sheath_1Ce6u5ke1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
M [auth e]Phage_sheath_1e6u5ke2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
N [auth d]Phage_sheath_1Ce6u5kd2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
N [auth d]Phage_sheath_1e6u5kd1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
O [auth c]Phage_sheath_1Ce6u5kc2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
O [auth c]Phage_sheath_1e6u5kc1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
QA [auth m]Phage_sheath_1Ce6u5km1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
QA [auth m]Phage_sheath_1e6u5km2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
RA [auth n]Phage_sheath_1Ce6u5kn1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
RA [auth n]Phage_sheath_1e6u5kn2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
SA [auth s]Phage_sheath_1Ce6u5ks2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
SA [auth s]Phage_sheath_1e6u5ks1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
TA [auth r]Phage_sheath_1Ce6u5kr1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
TA [auth r]Phage_sheath_1e6u5kr2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
UA [auth q]Phage_sheath_1Ce6u5kq2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
UA [auth q]Phage_sheath_1e6u5kq1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
VA [auth p]Phage_sheath_1Ce6u5kp2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
VA [auth p]Phage_sheath_1e6u5kp1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
WA [auth o]Phage_sheath_1Ce6u5ko1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
WA [auth o]Phage_sheath_1e6u5ko2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
XA [auth t]Phage_sheath_1Ce6u5kt1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
XA [auth t]Phage_sheath_1e6u5kt2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
YA [auth x]Phage_sheath_1Ce6u5kx1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
YA [auth x]Phage_sheath_1e6u5kx2 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
ZA [auth w]Phage_sheath_1Ce6u5kw2 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: Phage_sheath_1CECOD (1.6)
ZA [auth w]Phage_sheath_1e6u5kw1 A: a/b three-layered sandwichesX: Subtilisin-likeH: Domain III of tail sheath protein Gp18 (From Topology)T: Domain III of tail sheath protein Gp18F: Phage_sheath_1ECOD (1.6)
AA [auth L]Phage_tail_Xe6u5kL1 A: alpha arraysX: HTHH: LysM domain (From Topology)T: LysM domainF: Phage_tail_XECOD (1.6)
B [auth G]Phage_tail_Xe6u5kG1 A: alpha arraysX: HTHH: LysM domain (From Topology)T: LysM domainF: Phage_tail_XECOD (1.6)
BA [auth K]Phage_tail_Xe6u5kK1 A: alpha arraysX: HTHH: LysM domain (From Topology)T: LysM domainF: Phage_tail_XECOD (1.6)
CA [auth J]Phage_tail_Xe6u5kJ1 A: alpha arraysX: HTHH: LysM domain (From Topology)T: LysM domainF: Phage_tail_XECOD (1.6)
DA [auth I]Phage_tail_Xe6u5kI1 A: alpha arraysX: HTHH: LysM domain (From Topology)T: LysM domainF: Phage_tail_XECOD (1.6)
Z [auth H]Phage_tail_Xe6u5kH1 A: alpha arraysX: HTHH: LysM domain (From Topology)T: LysM domainF: Phage_tail_XECOD (1.6)
E [auth B]GPW_gp25e6u5kB1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)
P [auth A]GPW_gp25e6u5kA1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)
Q [auth F]GPW_gp25e6u5kF1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)
R [auth E]GPW_gp25e6u5kE1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)
S [auth D]GPW_gp25e6u5kD1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)
T [auth C]GPW_gp25e6u5kC1 A: a+b duplicates or obligate multimersX: Creatinase/aminopeptidase-likeH: gpW/gp25-like (From Topology)T: gpW/gp25-likeF: GPW_gp25ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF22671Tail sheath protein Gp18 domain III N-terminal region (Gp18_domIII_N)Tail sheath protein Gp18 domain III N-terminal regionThis entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti ...Domain
PF05489Phage Tail Protein X (Phage_tail_X)Phage Tail Protein XThis domain is found in a family of phage tail proteins. Visual analysis suggests that it is related to Pfam:PF01476 (personal obs: C Yeats). The functional annotation of family members further confirms this hypothesis. Domain
PF17482Phage tail sheath C-terminal domain (Phage_sheath_1C)Phage tail sheath C-terminal domainThis entry represents the C-terminal domain in a variety of phage tail sheath proteins [4]. Domain
PF22671Tail sheath protein Gp18 domain III N-terminal region (Gp18_domIII_N)Tail sheath protein Gp18 domain III N-terminal regionThis entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti ...Domain
PF04984Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)Phage tail sheath protein subtilisin-like domainThis entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure. Domain
PF04865Baseplate J-like protein (Baseplate_J)Baseplate J-like protein- Family
PF09684Phage tail protein (Tail_P2_I) (Tail_P2_I)Phage tail protein (Tail_P2_I)- Family
PF22671Tail sheath protein Gp18 domain III N-terminal region (Gp18_domIII_N)Tail sheath protein Gp18 domain III N-terminal regionThis entry represents the N-terminal segment of domain III from the phage tail sheath protein Gp18 y similar sequences [1-5]. Domain III is completed by Pfam:PF04984 with an overall structure consisting of a beta-sheet with five parallel and one anti ...Domain
PF04984Phage tail sheath protein subtilisin-like domain (Phage_sheath_1)Phage tail sheath protein subtilisin-like domainThis entry represents the second domain in a variety of phage tail sheath proteins. According to ECOD this domain has a subtilisin-like structure. Domain
PF04965Baseplate wedge protein gp25 (GPW_gp25)Baseplate wedge protein gp25This family represents T4 phage gp25 protein and gp25-like proteins, found in several systems, including contractile tail bacteriophages, the type VI secretion system (T6SS) and R-type pyocins, which constitute a multiprotein tubular apparatus to att ...Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR020287Tail sheath protein, C-terminal domainDomain
IPR054564Tail sheath protein Gp18-like, domain III N-terminal regionDomain
IPR035089Tail sheath protein, subtilisin-like domainDomain
IPR052042Bacteriophage Tail Sheath Structural ProteinFamily
IPR008861Phage Tail Protein X-likeFamily
IPR014507Baseplate assembly protein J, predictedFamily
IPR006949Baseplate protein J-likeDomain
IPR052726Bacteriophage Baseplate HubFamily
IPR006521Tail protein IFamily
IPR007048IraD/Gp25-likeDomain