Annotations: 6WPA

Structure of AvaR1 bound to DNA half-site

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth D]	Ldh_1_C	e6wpaD1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
J [auth H]	Ldh_1_C	e6wpaH1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
I [auth G]	Ldh_1_C	e6wpaG1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
H [auth F]	Ldh_1_C	e6wpaF1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
G [auth E]	Ldh_1_C	e6wpaE1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
E [auth C]	Ldh_1_C	e6wpaC1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
B	Ldh_1_C	e6wpaB1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)
A	Ldh_1_C	e6wpaA1	A: beta barrels	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ldh_1_C	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	PF00440	Bacterial regulatory proteins, tetR family (TetR_N)	Bacterial regulatory proteins, tetR family		Domain
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	PF21935	Tetracyclin repressor-like, C-terminal domain (TetR_C_45)	Tetracyclin repressor-like, C-terminal domain	This domain is found at the C-terminal end of CprB from Streptomyces coelicolor (Swiss:O66122) and similar bacterial transcriptional regulators. This region is the ligand-binding domain (LBD) [1,2]. It is often found associated with Pfam:PF00440.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth M], D [auth N]	PAL2-1-5'-GC	-	-	-
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	AvaR1	DNA binding binding nucleic acid binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR023772	DNA-binding HTH domain, TetR-type, conserved site	Conserved Site
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR009057	Homeodomain-like superfamily	Homologous Superfamily
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR047923	A-factor receptor protein-like	Family
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR054126	CprB tetracyclin repressor-like, C-terminal domain	Domain
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR001647	DNA-binding HTH domain, TetR-type	Domain
A, B, E [auth C], F [auth D], G [auth E], A, B, E [auth C], F [auth D], G [auth E], H [auth F], I [auth G], J [auth H]	IPR036271	Tetracyclin repressor-like, C-terminal domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

6WPA | pdb_00006wpa

Structure of AvaR1 bound to DNA half-site

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage