6YBS | pdb_00006ybs

Structure of a human 48S translational initiation complex - head


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth n]SCOP2B SuperfamilyNucleic acid-binding proteins 8063426 3000135 SCOP2B (2022-06-29)
E [auth h]SCOP2B SuperfamilyRibosomal protein S10 8098806 3001336 SCOP2B (2022-06-29)
F [auth o]SCOP2B SuperfamilyRNA-binding domain, RBD 8039192 3000110 SCOP2B (2022-06-29)
G [auth a]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055714 3000034 SCOP2B (2022-06-29)
H [auth m]SCOP2B SuperfamilyL30e-like 8063978 3001739 SCOP2B (2022-06-29)
I [auth i]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052572 3000068 SCOP2B (2022-06-29)
K [auth Z]SCOP2B SuperfamilyProkaryotic type KH domain (KH-domain type II) 8043545 3001043 SCOP2B (2022-06-29)
L [auth d]SCOP2B SuperfamilyWinged helix DNA-binding domain 8089318 3000034 SCOP2B (2022-06-29)
M [auth e]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090992 3000034 SCOP2B (2022-06-29)
N [auth f]SCOP2B SuperfamilyS13-like H2TH domain 8101555 3000053 SCOP2B (2022-06-29)
O [auth V]SCOP2B SuperfamilyRibosomal protein S7 8066003 3000799 SCOP2B (2022-06-29)
Q [auth Y]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082685 3000100 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth x]Utp12e6ybsx1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
B [auth c]Utp12e6ybsc1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
C [auth n]Utp12e6ybsn1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
D [auth X]Utp12e6ybsX1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
E [auth h]Utp12e6ybsh1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
F [auth o]Utp12e6ybso1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
G [auth a]Utp12e6ybsa1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
H [auth m]Utp12e6ybsm1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
I [auth i]Utp12e6ybsi1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
J [auth b]Utp12e6ybsb1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
K [auth Z]Utp12e6ybsZ1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
L [auth d]Utp12e6ybsd1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
M [auth e]Utp12e6ybse1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
N [auth f]Utp12e6ybsf1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
O [auth V]Utp12e6ybsV1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
P [auth k]Utp12e6ybsk1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)
Q [auth Y]Utp12e6ybsY1 A: alpha bundlesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Utp12ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
K [auth Z]3.30.300.20 Alpha Beta 2-Layer Sandwich GMP Synthetase Chain A, domain 3CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth Z]PF07650KH domain (KH_2)KH domainDomain
K [auth Z]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
O [auth V]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
Q [auth Y]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
R [auth A]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth x]Eukaryotic translation initiation factor 3 subunit D
B [auth c]Receptor of activated protein C kinase 1
C [auth n]40S ribosomal protein S28
D [auth X]40S ribosomal protein S17
E [auth h]40S ribosomal protein S20
F [auth o]Eukaryotic translation initiation factor 3 subunit G
G [auth a]40S ribosomal protein S10
H [auth m]40S ribosomal protein S12
I [auth i]40S ribosomal protein S29
J [auth b]40S ribosomal protein S15
K [auth Z]40S ribosomal protein S3
L [auth d]40S ribosomal protein S19
M [auth e]40S ribosomal protein S25
N [auth f]40S ribosomal protein S18
O [auth V]40S ribosomal protein S5
P [auth k]Ubiquitin-40S ribosomal protein S27a
Q [auth Y]40S ribosomal protein S16
R [auth A]18S rRNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth x]IPR007783Eukaryotic translation initiation factor 3 subunit DFamily
B [auth c]IPR019775WD40 repeat, conserved siteConserved Site
B [auth c]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
B [auth c]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
B [auth c]IPR045223Small ribosomal subunit protein RACK1-likeFamily
B [auth c]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
B [auth c]IPR001680WD40 repeatRepeat
C [auth n]IPR028626Ribosomal protein eS28 conserved siteConserved Site
C [auth n]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth n]IPR000289Small ribosomal subunit protein eS28Family
D [auth X]IPR001210Small ribosomal subunit protein eS17Family
D [auth X]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
D [auth X]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
E [auth h]IPR027486Small ribosomal subunit protein uS10 domainDomain
E [auth h]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
E [auth h]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
E [auth h]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
E [auth h]IPR001848Small ribosomal subunit protein uS10Family
F [auth o]IPR000504RNA recognition motif domainDomain
F [auth o]IPR034240eIF3G, RNA recognition motifDomain
F [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
F [auth o]IPR024675Eukaryotic translation initiation factor 3 subunit G, N-terminalDomain
F [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
F [auth o]IPR017334Eukaryotic translation initiation factor 3 subunit GFamily
G [auth a]IPR037447Small ribosomal subunit protein eS10Family
G [auth a]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
G [auth a]IPR005326Plectin/eS10, N-terminalDomain
H [auth m]IPR000530Small ribosomal subunit protein eS12Family
H [auth m]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
H [auth m]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
H [auth m]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
I [auth i]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
I [auth i]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
I [auth i]IPR001209Small ribosomal subunit protein uS14Family
I [auth i]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
J [auth b]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
J [auth b]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
J [auth b]IPR002222Small ribosomal subunit protein uS19Family
J [auth b]IPR005713Small ribosomal subunit protein uS19, eukaryota/archaeaFamily
K [auth Z]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
K [auth Z]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
K [auth Z]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
K [auth Z]IPR005703Small ribosomal subunit protein uS3, eukaryota/archaealFamily
K [auth Z]IPR004044K Homology domain, type 2Domain
K [auth Z]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
K [auth Z]IPR057258Small ribosomal subunit protein uS3Family
K [auth Z]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
L [auth d]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
L [auth d]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
L [auth d]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
L [auth d]IPR001266Small ribosomal subunit protein eS19Family
M [auth e]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
M [auth e]IPR004977Small ribosomal subunit protein eS25Family
N [auth f]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
N [auth f]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
N [auth f]IPR001892Small ribosomal subunit protein uS13Family
N [auth f]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
O [auth V]IPR023798Small ribosomal subunit protein uS7 domainDomain
O [auth V]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
O [auth V]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
O [auth V]IPR000235Small ribosomal subunit protein uS7Family
O [auth V]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
P [auth k]IPR019954Ubiquitin conserved siteConserved Site
P [auth k]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
P [auth k]IPR050158Ubiquitin and ubiquitin-likeFamily
P [auth k]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
P [auth k]IPR000626Ubiquitin-like domainDomain
P [auth k]IPR002906Small ribosomal subunit protein eS31Domain
P [auth k]IPR019956Ubiquitin domainDomain
P [auth k]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
Q [auth Y]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
Q [auth Y]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
Q [auth Y]IPR000754Small ribosomal subunit protein uS9Family
Q [auth Y]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth x]PharosO15371
B [auth c]PharosP63244
C [auth n]PharosP62857
D [auth X]PharosP08708
E [auth h]PharosP60866
F [auth o]PharosO75821
G [auth a]PharosP46783
H [auth m]PharosP25398
I [auth i]PharosP62273
J [auth b]PharosP62841
K [auth Z]PharosP23396
L [auth d]PharosP39019
M [auth e]PharosP62851
N [auth f]PharosP62269
O [auth V]PharosP46782
P [auth k]PharosP62979
Q [auth Y]PharosP62249