6YBW | pdb_00006ybw

Structure of a human 48S translational initiation complex - 40S body


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth C]SpoU_methylasee6ybwC1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
BSpoU_methylasee6ybwB1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
C [auth E]SpoU_methylasee6ybwE1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
DSpoU_methylasee6ybwD1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
E [auth G]SpoU_methylasee6ybwG1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
FSpoU_methylasee6ybwF1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
G [auth H]SpoU_methylasee6ybwH1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
H [auth K]SpoU_methylasee6ybwK1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
J [auth M]MIFe6ybwM1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: MIFECOD (v295)
K [auth L]SpoU_methylasee6ybwL1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
L [auth O]SpoU_methylasee6ybwO1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
M [auth N]SpoU_methylasee6ybwN1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
N [auth Q]SpoU_methylasee6ybwQ1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
O [auth P]SpoU_methylasee6ybwP1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
P [auth S]SpoU_methylasee6ybwS1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
R [auth T]SpoU_methylasee6ybwT1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
S [auth q]SpoU_methylasee6ybwq1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
T [auth p]SpoU_methylasee6ybwp1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
U [auth I]SpoU_methylasee6ybwI1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
W [auth y]MIFe6ybwy1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: MIFECOD (v295)
X [auth 9]SpoU_methylasee6ybw91 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
I [auth J]SpoU_methylasee6ybwJ1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)
V [auth z]MIFe6ybwz1 A: alpha arraysX: HTHH: HTHT: Three-helical HTHF: MIFECOD (v295)
Q [auth R]SpoU_methylasee6ybwR1 A: alpha arraysX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: SpoU_methylaseECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C]40S ribosomal protein S4, X isoform
40S ribosomal protein S11
C [auth E]40S ribosomal protein S23
40S ribosomal protein S9
E [auth G]40S ribosomal protein S7
40S ribosomal protein S30
G [auth H]40S ribosomal protein S27
H [auth K]40S ribosomal protein S21
J [auth M]40S ribosomal protein S17
K [auth L]40S ribosomal protein S2
L [auth O]40S ribosomal protein S3a
M [auth N]40S ribosomal protein SA
N [auth Q]40S ribosomal protein S26
O [auth P]40S ribosomal protein S14
P [auth S]40S ribosomal protein S6
R [auth T]40S ribosomal protein S24
S [auth q]Eukaryotic translation initiation factor 1A, X-chromosomal
T [auth p]Eukaryotic translation initiation factor 1
U [auth I]40S ribosomal protein S13
W [auth y]Eukaryotic translation initiation factor 3 subunit C
X [auth 9]60S ribosomal protein L41
Y [auth A]18S rRNA---
Z [auth 7]mRNA---
I [auth J]40S ribosomal protein S15a
V [auth z]Eukaryotic translation initiation factor 3 subunit J
Q [auth R]40S ribosomal protein S8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
A [auth C]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
A [auth C]IPR013845Small ribosomal subunit protein eS4, central regionDomain
A [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
A [auth C]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
A [auth C]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
A [auth C]IPR002942RNA-binding S4 domainDomain
A [auth C]IPR000876Small ribosomal subunit protein eS4Family
A [auth C]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
A [auth C]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
A [auth C]IPR005824KOWDomain
IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR000266Small ribosomal subunit protein uS17Family
IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
C [auth E]IPR006032Small ribosomal subunit protein uS12Family
C [auth E]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
C [auth E]IPR005680Small ribosomal subunit protein uS12, eukaryota/archaeaFamily
IPR005710Small ribosomal subunit protein uS4, eukaryota/archaeaFamily
IPR002942RNA-binding S4 domainDomain
IPR022801Small ribosomal subunit protein uS4Family
IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
E [auth G]IPR000554Small ribosomal subunit protein eS7Family
E [auth G]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
IPR019954Ubiquitin conserved siteConserved Site
IPR006846Small ribosomal subunit protein eS30Family
IPR039415Ubiquitin-like protein FUBIDomain
IPR000626Ubiquitin-like domainDomain
IPR019956Ubiquitin domainDomain
IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
G [auth H]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
G [auth H]IPR000592Small ribosomal subunit protein eS27Family
G [auth H]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
H [auth K]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
H [auth K]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
H [auth K]IPR001931Small ribosomal subunit protein eS21Family
J [auth M]IPR001210Small ribosomal subunit protein eS17Family
J [auth M]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
J [auth M]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
K [auth L]IPR005711Small ribosomal subunit protein uS5, eukaryota_archaeaFamily
K [auth L]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
K [auth L]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
K [auth L]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
K [auth L]IPR000851Small ribosomal subunit protein uS5Family
K [auth L]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
K [auth L]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
L [auth O]IPR001593Small ribosomal subunit protein eS1Family
L [auth O]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
L [auth O]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
M [auth N]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
M [auth N]IPR001865Small ribosomal subunit protein uS2Family
M [auth N]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
M [auth N]IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
M [auth N]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
M [auth N]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
M [auth N]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
N [auth Q]IPR047864Ribosomal protein eS26, conserved siteConserved Site
N [auth Q]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
N [auth Q]IPR000892Small ribosomal subunit protein eS26Family
O [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
O [auth P]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
O [auth P]IPR001971Small ribosomal subunit protein uS11Family
P [auth S]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
P [auth S]IPR001377Small ribosomal subunit protein eS6Family
P [auth S]IPR014401Small ribosomal subunit protein eS6-likeFamily
R [auth T]IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
R [auth T]IPR001976Small ribosomal subunit protein eS24Family
R [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
R [auth T]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
S [auth q]IPR018104Translation initiation factor 1A (eIF-1A), conserved siteConserved Site
S [auth q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
S [auth q]IPR006196RNA-binding domain, S1, IF1 typeDomain
S [auth q]IPR001253Translation initiation factor 1A (eIF-1A)Family
T [auth p]IPR005874Eukaryotic translation initiation factor SUI1Family
T [auth p]IPR001950SUI1 domainDomain
T [auth p]IPR036877SUI1 domain superfamilyHomologous Superfamily
U [auth I]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
U [auth I]IPR000589Small ribosomal subunit protein uS15Family
U [auth I]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
U [auth I]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotaFamily
W [auth y]IPR008905Eukaryotic translation initiation factor 3 subunit C, N-terminal domainDomain
W [auth y]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
W [auth y]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
W [auth y]IPR027516Eukaryotic translation initiation factor 3 subunit CFamily
W [auth y]IPR000717Proteasome component (PCI) domainDomain
W [auth y]IPR058999EIF3CL-like, C-terminal domainDomain
X [auth 9]IPR007836Large ribosomal subunit protein eS32Family
I [auth J]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
I [auth J]IPR000630Small ribosomal subunit protein uS8Family
I [auth J]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
V [auth z]IPR013906Eukaryotic translation initiation factor 3 subunit JFamily
V [auth z]IPR023194Eukaryotic translation initiation factor 3-like domain superfamilyHomologous Superfamily
Q [auth R]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
Q [auth R]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
Q [auth R]IPR001047Small ribosomal subunit protein eS8Family
Q [auth R]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotaHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth C]P62701
P62280
C [auth E]P62266
P46781
E [auth G]P62081
P62861
G [auth H]P42677
H [auth K]P63220
J [auth M]P08708
K [auth L]P15880
M [auth N]P08865
N [auth Q]P62854
O [auth P]P62263
P [auth S]P62753
R [auth T]P62847
S [auth q]P47813
T [auth p]P41567
U [auth I]P62277
W [auth y]Q99613
X [auth 9]P62945
I [auth J]P62244
V [auth z]O75822
Q [auth R]P62241