6ZHU
Yeast Uba1 in complex with Ubc3 and ATP
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | UBC-like | 8095691 | 3000570 | SCOP2B (2022-06-29) |
B [auth F] | SCOP2B Superfamily | UBC-like | 8095691 | 3000570 | SCOP2B (2022-06-29) |
C [auth D] | SCOP2B Superfamily | UBC-like | 8095691 | 3000570 | SCOP2B (2022-06-29) |
D [auth H] | SCOP2B Superfamily | UBC-like | 8095691 | 3000570 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003540 | 3000112 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8017546 | 3000112 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | E2 binding domain-like | 8003942 | 3000147 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | SCCH domain-like | 8003543 | 3000139 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | FCCH domain-like | 8003532 | 3000138 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8017546 | 3000112 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003540 | 3000112 | SCOP2B (2022-06-29) |
E [auth A] | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003552 | 3000140 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003552 | 3000140 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8017546 | 3000112 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003540 | 3000112 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003540 | 3000112 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | SCCH domain-like | 8003543 | 3000139 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8017546 | 3000112 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | E2 binding domain-like | 8003942 | 3000147 | SCOP2B (2022-06-29) |
F [auth E] | SCOP2B Superfamily | FCCH domain-like | 8003532 | 3000138 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003540 | 3000112 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8017546 | 3000112 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | FCCH domain-like | 8003532 | 3000138 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | SCCH domain-like | 8003543 | 3000139 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | E2 binding domain-like | 8003942 | 3000147 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003552 | 3000140 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8017546 | 3000112 | SCOP2B (2022-06-29) |
G [auth C] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003540 | 3000112 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8017546 | 3000112 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | CC (catalytic cysteine) domain-like | 8003552 | 3000140 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | SCCH domain-like | 8003543 | 3000139 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | FCCH domain-like | 8003532 | 3000138 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003540 | 3000112 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8017546 | 3000112 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | E2 binding domain-like | 8003942 | 3000147 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Activating enzymes of the ubiquitin-like proteins | 8003540 | 3000112 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | UQ_con | e6zhuB1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
B [auth F] | UQ_con | e6zhuF1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
C [auth D] | UQ_con | e6zhuD1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
D [auth H] | UQ_con | e6zhuH1 | A: a+b two layers | X: UBC-like | H: UBC-like (From Topology) | T: UBC-like | F: UQ_con | ECOD (1.6) |
E [auth A] | E1_FCCH | e6zhuA6 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: E1_FCCH | ECOD (1.6) |
E [auth A] | UBA_e1_thiolCys | e6zhuA5 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: UBA_e1_thiolCys | ECOD (1.6) |
E [auth A] | ThiF_3 | e6zhuA1 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: ThiF_3 | ECOD (1.6) |
E [auth A] | E1_UFD | e6zhuA2 | A: a+b two layers | X: beta-Grasp | H: E2-binding domain of E1 (From Topology) | T: E2-binding domain of E1 | F: E1_UFD | ECOD (1.6) |
E [auth A] | ThiF_1 | e6zhuA4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_1 | ECOD (1.6) |
E [auth A] | ThiF_3 | e6zhuA3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_3 | ECOD (1.6) |
F [auth E] | E1_FCCH | e6zhuE5 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: E1_FCCH | ECOD (1.6) |
F [auth E] | UBA_e1_thiolCys | e6zhuE4 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: UBA_e1_thiolCys | ECOD (1.6) |
F [auth E] | ThiF_3 | e6zhuE3 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: ThiF_3 | ECOD (1.6) |
F [auth E] | E1_UFD | e6zhuE2 | A: a+b two layers | X: beta-Grasp | H: E2-binding domain of E1 (From Topology) | T: E2-binding domain of E1 | F: E1_UFD | ECOD (1.6) |
F [auth E] | ThiF_1 | e6zhuE6 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_1 | ECOD (1.6) |
F [auth E] | ThiF_3 | e6zhuE1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_3 | ECOD (1.6) |
G [auth C] | E1_FCCH | e6zhuC3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: E1_FCCH | ECOD (1.6) |
G [auth C] | UBA_e1_thiolCys | e6zhuC1 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: UBA_e1_thiolCys | ECOD (1.6) |
G [auth C] | ThiF_3 | e6zhuC2 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: ThiF_3 | ECOD (1.6) |
G [auth C] | E1_UFD | e6zhuC6 | A: a+b two layers | X: beta-Grasp | H: E2-binding domain of E1 (From Topology) | T: E2-binding domain of E1 | F: E1_UFD | ECOD (1.6) |
G [auth C] | ThiF_1 | e6zhuC5 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_1 | ECOD (1.6) |
G [auth C] | ThiF_3 | e6zhuC4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_3 | ECOD (1.6) |
H [auth G] | E1_FCCH | e6zhuG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: E1_FCCH | ECOD (1.6) |
H [auth G] | UBA_e1_thiolCys | e6zhuG3 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: UBA_e1_thiolCys | ECOD (1.6) |
H [auth G] | ThiF_3 | e6zhuG5 | A: alpha arrays | X: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | H: Catalytic cysteine domain in ubiquitin-activating enzyme (From Topology) | T: Catalytic cysteine domain in ubiquitin-activating enzyme | F: ThiF_3 | ECOD (1.6) |
H [auth G] | E1_UFD | e6zhuG6 | A: a+b two layers | X: beta-Grasp | H: E2-binding domain of E1 (From Topology) | T: E2-binding domain of E1 | F: E1_UFD | ECOD (1.6) |
H [auth G] | ThiF_1 | e6zhuG2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_1 | ECOD (1.6) |
H [auth G] | ThiF_3 | e6zhuG4 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Activating enzymes of the ubiquitin-like proteins | F: ThiF_3 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B], B [auth F], C [auth D], D [auth H] | PF00179 | Ubiquitin-conjugating enzyme (UQ_con) | Ubiquitin-conjugating enzyme | Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ... | Domain |
E [auth A], F [auth E], G [auth C], H [auth G] | PF00899 | ThiF family (ThiF) | ThiF family | This domain is found in ubiquitin activating E1 family and members of the bacterial ThiF/MoeB/HesA family. It is repeated in Ubiquitin-activating enzyme E1 [1-3]. | Domain |
E [auth A], F [auth E], G [auth C], H [auth G] | PF10585 | Ubiquitin-activating enzyme, SCCH domain (UBA_E1_SCCH) | Ubiquitin-activating enzyme, SCCH domain | Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free A ... | Domain |
E [auth A], F [auth E], G [auth C], H [auth G] | PF09358 | Ubiquitin fold domain (E1_UFD) | Ubiquitin fold domain | The ubiquitin fold domain is found at the C-terminus of ubiquitin-activating E1 family enzymes. This domain binds to E2 enzymes [1]. | Domain |
E [auth A], F [auth E], G [auth C], H [auth G] | PF16190 | Ubiquitin-activating enzyme E1 FCCH domain (E1_FCCH) | Ubiquitin-activating enzyme E1 FCCH domain | This domain is found in the ubiquitin-activating E1 family enzymes [1]. | Domain |
E [auth A], F [auth E], G [auth C], H [auth G] | PF16191 | Ubiquitin-activating enzyme E1 four-helix bundle (E1_4HB) | Ubiquitin-activating enzyme E1 four-helix bundle | This domain is found in the ubiquitin-activating E1 family enzymes [1]. | Domain |