6ZYX | pdb_00006zyx

Outer Dynein Arm-Shulin complex - Shulin region from Tetrahymena thermophila

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E [auth M]	SCOP2 Family	DLC	8102440	4001121	SCOP2 (2022-06-29)
E [auth M]	SCOP2 Superfamily	DLC-like	8102441	3000821	SCOP2 (2022-06-29)
B [auth J]	SCOP2B Superfamily	DLC-like	8102443	3000821	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth O]	adh_short_C2	e6zyxO1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: adh_short_C2	ECOD (v294.1)
F [auth N]	adh_short_C2	e6zyxN1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: adh_short_C2	ECOD (v294.1)
E [auth M]	adh_short_C2	e6zyxM1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: adh_short_C2	ECOD (v294.1)
D [auth L]	adh_short_C2	e6zyxL1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: adh_short_C2	ECOD (v294.1)
C [auth K]	adh_short_C2	e6zyxK1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: adh_short_C2	ECOD (v294.1)
B [auth J]	adh_short_C2	e6zyxJ1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: adh_short_C2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
H [auth Y]	PF23281	Dynein axonemal assembly factor 9 N-terminal domain (DAAF9_N)	Dynein axonemal assembly factor 9 N-terminal domain	This domain is found N-terminal in the human Dynein axonemal assembly factor 9 (DAAF9) and related proteins. It shares similarity with the N-terminal domains of shulin that binds newly synthesized outer dynein arm complexes [1] and the aminopeptidase ...	This domain is found N-terminal in the human Dynein axonemal assembly factor 9 (DAAF9) and related proteins. It shares similarity with the N-terminal domains of shulin that binds newly synthesized outer dynein arm complexes [1] and the aminopeptidase P domain of Spt16, a core component of the histone chaperone FACT. These domains likely share the same alpha/beta fold with Ribonuclease H-like motif.	Domain
E [auth M]	PF01221	Dynein light chain type 1 (Dynein_light)	Dynein light chain type 1		Domain
D [auth L]	PF01221	Dynein light chain type 1 (Dynein_light)	Dynein light chain type 1		Domain
C [auth K]	PF01221	Dynein light chain type 1 (Dynein_light)	Dynein light chain type 1		Domain
A [auth C]	PF08393	Dynein heavy chain, N-terminal region 2 (DHC_N2)	Dynein heavy chain, N-terminal region 2	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I [auth d]	Dynein intermediate chain 2	protein binding binding dynein heavy chain binding dynein light chain binding	organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly outer dynein arm assembly protein-containing complex assembly cilium assembly organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly outer dynein arm assembly protein-containing complex assembly cilium assembly cellular process microtubule-based process cellular component organization or biogenesis axoneme assembly cytoskeleton organization cilium organization cell projection assembly microtubule-based movement cilium movement	membrane-bounded organelle protein-containing complex outer dynein arm intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection membrane-bounded organelle protein-containing complex outer dynein arm intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex cytoplasm microtubule cytoskeleton polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
H [auth Y]	Shulin	-	-	-
G [auth O]	Dynein light chain tctex-type 1 protein	protein binding binding dynein intermediate chain binding	microtubule-based movement microtubule-based process cellular process	cellular anatomical structure intracellular anatomical structure cytoplasm protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex intracellular membraneless organelle intracellular organelle cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton
F [auth N]	Dynein light chain 2A	protein binding binding dynein intermediate chain binding	microtubule-based movement microtubule-based process cellular process	cellular anatomical structure intracellular anatomical structure cytoplasm protein-containing complex cytoplasmic dynein complex catalytic complex dynein complex intracellular membraneless organelle intracellular organelle cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton
E [auth M]	Dynein light chain	protein binding binding dynein intermediate chain binding	RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport microtubule-based process cellular process establishment of protein localization RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport microtubule-based process cellular process establishment of protein localization protein transport intracellular protein localization	protein-containing complex intracellular anatomical structure cytoplasmic dynein complex catalytic complex dynein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton polymeric cytoskeletal fiber protein-containing complex intracellular anatomical structure cytoplasmic dynein complex catalytic complex dynein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
D [auth L]	Dynein light chain	-	microtubule-based process cellular process	protein-containing complex intracellular anatomical structure catalytic complex dynein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton
C [auth K]	Dynein light chain	protein binding binding dynein intermediate chain binding	microtubule-based process cellular process	protein-containing complex intracellular anatomical structure cytoplasmic dynein complex catalytic complex dynein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton polymeric cytoskeletal fiber protein-containing complex intracellular anatomical structure cytoplasmic dynein complex catalytic complex dynein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
B [auth J]	Dynein light chain	protein binding binding dynein intermediate chain binding	RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport microtubule-based process cellular process establishment of protein localization RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport microtubule-based process cellular process establishment of protein localization protein transport intracellular protein localization	protein-containing complex intracellular anatomical structure cytoplasmic dynein complex catalytic complex dynein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton polymeric cytoskeletal fiber protein-containing complex intracellular anatomical structure cytoplasmic dynein complex catalytic complex dynein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex microtubule cytoskeleton polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex membrane-bounded organelle nucleus intracellular membrane-bounded organelle
J [auth e]	Flagellar outer dynein arm intermediate protein, putative	protein binding binding dynein heavy chain binding dynein light chain binding	organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly outer dynein arm assembly protein-containing complex assembly cilium assembly organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly outer dynein arm assembly protein-containing complex assembly cilium assembly cellular process microtubule-based process cellular component organization or biogenesis axoneme assembly cytoskeleton organization cilium organization cell projection assembly microtubule-based movement cilium movement	membrane-bounded organelle protein-containing complex outer dynein arm intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection membrane-bounded organelle protein-containing complex outer dynein arm intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex cytoplasm microtubule cytoskeleton polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
A [auth C]	Dynein heavy chain, outer arm protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding dynein light intermediate chain binding protein binding microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity minus-end-directed microtubule motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity dynein intermediate chain binding	microtubule-based movement microtubule-based process cellular process	membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure membrane-bounded organelle protein-containing complex intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex cytoplasm microtubule cytoskeleton polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
I [auth d]	IPR001680	WD40 repeat	Repeat
I [auth d]	IPR050687	Dynein axonemal intermediate chain 1/2/3/4	Family
I [auth d]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
I [auth d]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
H [auth Y]	IPR056498	DAAF9, N-terminal domain	Domain
H [auth Y]	IPR040342	Dynein axonemal assembly factor 9 DNAAF9	Family
G [auth O]	IPR005334	Dynein light chain Tctex-1-like	Family
G [auth O]	IPR038586	Tctex-1-like superfamily	Homologous Superfamily
F [auth N]	IPR005334	Dynein light chain Tctex-1-like	Family
F [auth N]	IPR038586	Tctex-1-like superfamily	Homologous Superfamily
E [auth M]	IPR037177	Dynein light chain superfamily	Homologous Superfamily
E [auth M]	IPR001372	Dynein light chain, type 1/2	Family
D [auth L]	IPR037177	Dynein light chain superfamily	Homologous Superfamily
D [auth L]	IPR001372	Dynein light chain, type 1/2	Family
C [auth K]	IPR037177	Dynein light chain superfamily	Homologous Superfamily
C [auth K]	IPR001372	Dynein light chain, type 1/2	Family
B [auth J]	IPR037177	Dynein light chain superfamily	Homologous Superfamily
B [auth J]	IPR001372	Dynein light chain, type 1/2	Family
J [auth e]	IPR001680	WD40 repeat	Repeat
J [auth e]	IPR050687	Dynein axonemal intermediate chain 1/2/3/4	Family
J [auth e]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
J [auth e]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
A [auth C]	IPR026983	Dynein heavy chain	Family
A [auth C]	IPR013602	Dynein heavy chain, linker	Domain
A [auth C]	IPR042219	Dynein heavy chain, AAA lid domain superfamily	Homologous Superfamily
A [auth C]	IPR035706	Dynein heavy chain, ATP-binding dynein motor region	Domain
A [auth C]	IPR041228	Dynein heavy chain, C-terminal domain	Domain
A [auth C]	IPR003593	AAA+ ATPase domain	Domain
A [auth C]	IPR041658	Dynein heavy chain, AAA lid domain	Domain
A [auth C]	IPR041466	Dynein heavy chain, AAA 5 extension domain	Domain
A [auth C]	IPR041589	Dynein heavy chain 3, AAA+ lid domain	Domain
A [auth C]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth C]	IPR042228	Dynein heavy chain, linker, subdomain 3	Homologous Superfamily
A [auth C]	IPR035699	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Domain
A [auth C]	IPR024743	Dynein heavy chain, coiled coil stalk	Domain
A [auth C]	IPR013594	Dynein heavy chain, tail	Domain
A [auth C]	IPR043157	Dynein heavy chain, AAA1 domain, small subdomain	Homologous Superfamily
A [auth C]	IPR004273	Dynein heavy chain, D6 P-loop domain	Domain
A [auth C]	IPR042222	Dynein heavy chain, domain 2, N-terminal	Homologous Superfamily
A [auth C]	IPR043160	Dynein heavy chain, C-terminal domain, barrel region	Homologous Superfamily
A [auth C]	IPR024317	Dynein heavy chain, AAA module D4	Domain