7A9A | pdb_00007a9a

Crystal structure of rubredoxin B (Rv3250c) from Mycobacterium tuberculosis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d7a9ah_	Small proteins	Rubredoxin-like	Rubredoxin-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
G	d7a9ag_	Small proteins	Rubredoxin-like	Rubredoxin-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
F	d7a9af_	Small proteins	Rubredoxin-like	Rubredoxin-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
E	d7a9ae_	Small proteins	Rubredoxin-like	Rubredoxin-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
D	d7a9ad_	Small proteins	Rubredoxin-like	Rubredoxin-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
C	d7a9ac_	Small proteins	Rubredoxin-like	Rubredoxin-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
B	d7a9ab_	Small proteins	Rubredoxin-like	Rubredoxin-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)
A	d7a9aa_	Small proteins	Rubredoxin-like	Rubredoxin-like	automated matches	automated matches	(Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Rubredoxin-like	8102675	3001257	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Rubredoxin-like	8102675	3001257	SCOP2B (2022-06-29)
F	SCOP2 Family	Rubredoxin	8102674	4003679	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	Rubredoxin-like	8102675	3001257	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	Rubredoxin-like	8102675	3001257	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Rubredoxin-like	8102675	3001257	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Rubredoxin-like	8102675	3001257	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Rubredoxin-like	8102675	3001257	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Rubredoxin-like	8102675	3001257	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H		e7a9aH1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.1)
G		e7a9aG1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.1)
F		e7a9aF1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.1)
E		e7a9aE1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.1)
D		e7a9aD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.1)
C		e7a9aC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.1)
B		e7a9aB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F:	ECOD (v294.1)
A	CoV_S2	e7a9aA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: CoV_S2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF00301	Rubredoxin (Rubredoxin)	Rubredoxin		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Rubredoxin	electron transfer activity cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	catabolic process hydrocarbon catabolic process metabolic process cellular process alkane catabolic process hydrocarbon metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR050526	Rubredoxin electron transfer	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018527	Rubredoxin, iron-binding site	Binding Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR024934	Rubredoxin-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR024935	Rubredoxin domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.