7AOA
Structure of the extended MTA1/HDAC1/MBD2/RBBP4 NURD deacetylase complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth C] | SCOP2B Superfamily | DNA-binding domain | 8081855 | 3000183 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | UBA-like | 8102939 | 3001235 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | MTA1-R1 and -R2 domains | 8102936 | 3002763 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | Homeodomain-like | 8102941 | 3000001 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | MTA1-R1 and -R2 domains | 8102936 | 3002763 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | UBA-like | 8102939 | 3001235 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Homeodomain-like | 8102941 | 3000001 | SCOP2B (2022-06-29) |
D [auth E] | SCOP2B Superfamily | Arginase/deacetylase-like | 8088480 | 3000260 | SCOP2B (2022-06-29) |
E [auth B] | SCOP2B Superfamily | Arginase/deacetylase-like | 8088480 | 3000260 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | WD40 repeat-like | 8053350 | 3001694 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | WD40 repeat-like | 8053350 | 3001694 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth C] | MBD | e7aoaC1 | A: a+b two layers | X: DNA-binding domain | H: Methyl-CpG-binding domain, MBD (From Topology) | T: Methyl-CpG-binding domain, MBD | F: MBD | ECOD (1.6) |
D [auth E] | Hist_deacetyl | e7aoaE1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Arginase/deacetylase | F: Hist_deacetyl | ECOD (1.6) |
E [auth B] | Hist_deacetyl | e7aoaB1 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Arginase/deacetylase | F: Hist_deacetyl | ECOD (1.6) |
F | ANAPC4_WD40_20 | e7aoaF1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_20 | ECOD (1.6) |
G | ANAPC4_WD40_20 | e7aoaG1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_20 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth D], C [auth A] | PF01448 | ELM2 domain (ELM2) | ELM2 domain | - | Family |
B [auth D], C [auth A] | PF00249 | Myb-like DNA-binding domain (Myb_DNA-binding) | Myb-like DNA-binding domain | This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1]. | Domain |
D [auth E], E [auth B] | PF00850 | Histone deacetylase domain (Hist_deacetyl) | Histone deacetylase domain | Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins [1]. ... | Domain |
PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex (CAF1C_H4-bd) | Histone-binding protein RBBP4 or subunit C of CAF1 complex | - | Repeat | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |