Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth C]SCOP2B SuperfamilyDNA-binding domain 8081855 3000183 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyUBA-like 8102939 3001235 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyMTA1-R1 and -R2 domains 8102936 3002763 SCOP2B (2022-06-29)
B [auth D]SCOP2B SuperfamilyHomeodomain-like 8102941 3000001 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyMTA1-R1 and -R2 domains 8102936 3002763 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyUBA-like 8102939 3001235 SCOP2B (2022-06-29)
C [auth A]SCOP2B SuperfamilyHomeodomain-like 8102941 3000001 SCOP2B (2022-06-29)
D [auth E]SCOP2B SuperfamilyArginase/deacetylase-like 8088480 3000260 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyArginase/deacetylase-like 8088480 3000260 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyWD40 repeat-like 8053350 3001694 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyWD40 repeat-like 8053350 3001694 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth C]MBDe7aoaC1 A: a+b two layersX: DNA-binding domainH: Methyl-CpG-binding domain, MBD (From Topology)T: Methyl-CpG-binding domain, MBDF: MBDECOD (1.6)
D [auth E]Hist_deacetyle7aoaE1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: Arginase/deacetylaseF: Hist_deacetylECOD (1.6)
E [auth B]Hist_deacetyle7aoaB1 A: a/b three-layered sandwichesX: HAD domain-likeH: HAD domain-relatedT: Arginase/deacetylaseF: Hist_deacetylECOD (1.6)
FANAPC4_WD40_20e7aoaF1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_20ECOD (1.6)
GANAPC4_WD40_20e7aoaG1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_20ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth D],
C [auth A]
PF01448ELM2 domain (ELM2)ELM2 domain- Family
B [auth D],
C [auth A]
PF00249Myb-like DNA-binding domain (Myb_DNA-binding)Myb-like DNA-binding domainThis family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].Domain
D [auth E],
E [auth B]
PF00850Histone deacetylase domain (Hist_deacetyl)Histone deacetylase domainHistones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins [1]. ...Histones can be reversibly acetylated on several lysine residues. Regulation of transcription is caused in part by this mechanism. Histone deacetylases catalyse the removal of the acetyl group. Histone deacetylases are related to other proteins [1].
Domain
F, G
PF12265Histone-binding protein RBBP4 or subunit C of CAF1 complex (CAF1C_H4-bd)Histone-binding protein RBBP4 or subunit C of CAF1 complex- Repeat
F, G
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth C]Methyl-CpG-binding domain protein 2
B [auth D],
C [auth A]
Metastasis-associated protein MTA1
D [auth E],
E [auth B]
Histone deacetylase 1
F, G
Histone-binding protein RBBP4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth C]IPR025884Methyl-CpG binding protein 2/3, C-terminal domainDomain
A [auth C]IPR016177DNA-binding domain superfamilyHomologous Superfamily
A [auth C]IPR001739Methyl-CpG DNA bindingDomain
A [auth C]IPR032343Methyl-CpG-binding domain protein 2/3, p55-binding regionDomain
B [auth D],
C [auth A]
IPR001025Bromo adjacent homology (BAH) domainDomain
B [auth D],
C [auth A]
IPR000679Zinc finger, GATA-typeDomain
B [auth D],
C [auth A]
IPR000949ELM2 domainDomain
B [auth D],
C [auth A]
IPR009057Homedomain-like superfamilyHomologous Superfamily
B [auth D],
C [auth A]
IPR043151Bromo adjacent homology (BAH) domain superfamilyHomologous Superfamily
B [auth D],
C [auth A]
IPR017884SANT domainDomain
B [auth D],
C [auth A]
IPR001005SANT/Myb domainDomain
B [auth D],
C [auth A]
IPR035170Metastasis-associated protein MTA1, R1 domainDomain
B [auth D],
C [auth A]
IPR040138Mesoderm induction early response protein/metastasis-associated proteinFamily
D [auth E],
E [auth B]
IPR000286Histone deacetylase familyFamily
D [auth E],
E [auth B]
IPR023801Histone deacetylase domainDomain
D [auth E],
E [auth B]
IPR003084Histone deacetylaseFamily
D [auth E],
E [auth B]
IPR050284Histone deacetylase and polyamine deacetylaseFamily
D [auth E],
E [auth B]
IPR037138Histone deacetylase domain superfamilyHomologous Superfamily
D [auth E],
E [auth B]
IPR023696Ureohydrolase domain superfamilyHomologous Superfamily
F, G
IPR050459WD repeat RBAP46/RBAP48/MSI1Family
F, G
IPR019775WD40 repeat, conserved siteConserved Site
F, G
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
F, G
IPR022052Histone-binding protein RBBP4, N-terminalDomain
F, G
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
F, G
IPR001680WD40 repeatRepeat
F, G
IPR020472G-protein beta WD-40 repeatRepeat

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth C]PharosQ9UBB5
B [auth D],
C [auth A]
PharosQ13330
D [auth E],
E [auth B]
PharosQ13547
F, G
PharosQ09028