7CFX | pdb_00007cfx

NAD-soaked Holo-methanol dehydrogenase (MDH) from Methylococcus capsulatus (Bath)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d7cfxp_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
N [auth O]	d7cfxo_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
L [auth J]	d7cfxj_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
J [auth I]	d7cfxi_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
H [auth F]	d7cfxf_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
F [auth E]	d7cfxe_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
D [auth L]	d7cfxl_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
B [auth K]	d7cfxk_	All alpha proteins	Non-globular all-alpha subunits of globular proteins	Methanol dehydrogenase subunit	Methanol dehydrogenase subunit	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
O [auth N]	d7cfxn_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
M	d7cfxm_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
K [auth H]	d7cfxh_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
I [auth G]	d7cfxg_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
G [auth B]	d7cfxb_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
E [auth A]	d7cfxa_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
C [auth D]	d7cfxd_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)
A [auth C]	d7cfxc_	All beta proteins	8-bladed beta-propeller	Quinoprotein alcohol dehydrogenase-like	Quinoprotein alcohol dehydrogenase-like	automated matches	(Methylococcus capsulatus str. Bath ) [TaxId: 243233 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
N [auth O]	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
L [auth J]	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
J [auth I]	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
F [auth E]	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
D [auth L]	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
B [auth K]	SCOP2B Superfamily	Methanol dehydrogenase subunit	8077627	3001764	SCOP2B (2022-06-29)
O [auth N]	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
I [auth G]	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
G [auth B]	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
E [auth A]	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
C [auth D]	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)
A [auth C]	SCOP2B Superfamily	Quinoprotein alcohol dehydrogenase-like	8076950	3001727	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	PsbY	e7cfxP1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
N [auth O]	PsbY	e7cfxO1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
L [auth J]	PsbY	e7cfxJ1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
J [auth I]	PsbY	e7cfxI1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
H [auth F]	PsbY	e7cfxF1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
F [auth E]	PsbY	e7cfxE1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
D [auth L]	PsbY	e7cfxL1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
B [auth K]	PsbY	e7cfxK1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
O [auth N]	PsbY	e7cfxN1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
M	PsbY	e7cfxM1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
K [auth H]	PsbY	e7cfxH1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
I [auth G]	PsbY	e7cfxG1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
G [auth B]	PsbY	e7cfxB1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
E [auth A]	PsbY	e7cfxA1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
C [auth D]	PsbY	e7cfxD1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)
A [auth C]	PsbY	e7cfxC1	A: alpha bundles	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: PsbY	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth K], D [auth L], F [auth E], H [auth F], J [auth I], B [auth K], D [auth L], F [auth E], H [auth F], J [auth I], L [auth J], N [auth O], P	PF02315	Methanol dehydrogenase beta subunit (MDH)	Methanol dehydrogenase beta subunit	Methanol dehydrogenase (MDH) is a bacterial periplasmic quinoprotein that oxidises methanol to formaldehyde. MDH is a tetramer of two alpha and two beta subunits. This family contains the small beta subunit.	Domain
A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], K [auth H], M, O [auth N]	PF01011	Glucose/ethanol/alcohol dehydrogenase, beta-propeller domain (PQQ)	Glucose/ethanol/alcohol dehydrogenase, beta-propeller domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth K], D [auth L], F [auth E], H [auth F], J [auth I], B [auth K], D [auth L], F [auth E], H [auth F], J [auth I], L [auth J], N [auth O], P	Methanol dehydrogenase [cytochrome c] subunit 2	alcohol dehydrogenase [NAD(P)+] activity oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors alcohol dehydrogenase (NAD+) activity catalytic activity oxidoreductase activity, acting on the CH-OH group of donors, cytochrome as acceptor alcohol dehydrogenase (cytochrome c(L)) activity	methanol oxidation alcohol metabolic process small molecule metabolic process metabolic process cellular process methanol metabolic process primary alcohol metabolic process	-
A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], K [auth H], M, O [auth N]	Methanol dehydrogenase protein, large subunit	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity tetrapyrrole binding heme binding organic acid binding anion binding carboxylic acid binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors catalytic activity tetrapyrrole binding heme binding organic acid binding anion binding carboxylic acid binding heterocyclic compound binding pyrroloquinoline quinone binding	-	cellular anatomical structure membrane outer membrane-bounded periplasmic space cell envelope periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth K], D [auth L], F [auth E], H [auth F], J [auth I], B [auth K], D [auth L], F [auth E], H [auth F], J [auth I], L [auth J], N [auth O], P	IPR036557	Methanol dehydrogenase, beta subunit superfamily	Homologous Superfamily
B [auth K], D [auth L], F [auth E], H [auth F], J [auth I], B [auth K], D [auth L], F [auth E], H [auth F], J [auth I], L [auth J], N [auth O], P	IPR003420	Methanol dehydrogenase, beta subunit	Family
A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], K [auth H], M, O [auth N]	IPR018391	Pyrrolo-quinoline quinone beta-propeller repeat	Repeat
A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], K [auth H], M, O [auth N]	IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily	Homologous Superfamily
A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], K [auth H], M, O [auth N]	IPR001479	Quinoprotein dehydrogenase, conserved site	Conserved Site
A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], K [auth H], M, O [auth N]	IPR002372	Pyrrolo-quinoline quinone repeat domain	Domain
A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], A [auth C], C [auth D], E [auth A], G [auth B], I [auth G], K [auth H], M, O [auth N]	IPR017512	PQQ-dependent dehydrogenase, methanol/ethanol family	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.