7DZ8 | pdb_00007dz8

State transition supercomplex PSI-LHCI-LHCII from the LhcbM1 lacking mutant of Chlamydomonas reinhardtii


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Fd7dz8f_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit III of photosystem I reaction centre, PsaF automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Ed7dz8e_ All beta proteins SH3-like barrel Electron transport accessory proteins automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Dd7dz8d_ Alpha and beta proteins (a+b) Photosystem I subunit PsaD Photosystem I subunit PsaD Photosystem I subunit PsaD automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Cd7dz8c_ Alpha and beta proteins (a+b) Ferredoxin-like 4Fe-4S ferredoxins 7-Fe ferredoxin automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
BA [auth V]d7dz8v_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Zd7dz8z_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Yd7dz8y_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
AA [auth U]d7dz8u_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Xd7dz8x_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
CA [auth W]d7dz8w_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
W [auth 9]d7dz89_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
V [auth 8]d7dz88_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
U [auth 7]d7dz87_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Bd7dz8b_ Membrane and cell surface proteins and peptides Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB Photosystem I subunits PsaA/PsaB automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
R [auth 4]d7dz84_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Q [auth 3]d7dz83_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
O [auth a]d7dz8a_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
N [auth 1]d7dz81_ Membrane and cell surface proteins and peptides Chlorophyll a-b binding protein Chlorophyll a-b binding protein automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)
Jd7dz8j_ Membrane and cell surface proteins and peptides Single transmembrane helix Subunit IX of photosystem I reaction centre, PsaJ automated matches automated matches (Chlamydomonas reinhardtii ) [TaxId: 3055 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IV-sete7dz8I1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
HV-sete7dz8H1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
GV-sete7dz8G1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
FV-sete7dz8F1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
EV-sete7dz8E1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
DV-sete7dz8D1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
CV-sete7dz8C1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
BA [auth V]V-sete7dz8V1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
ZV-sete7dz8Z1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
YV-sete7dz8Y1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
AA [auth U]V-sete7dz8U1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
XV-sete7dz8X1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
CA [auth W]V-sete7dz8W1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
W [auth 9]V-sete7dz891 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
V [auth 8]V-sete7dz881 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
U [auth 7]V-sete7dz871 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
BV-sete7dz8B1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
T [auth 6]V-sete7dz861 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
S [auth 5]V-sete7dz851 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
R [auth 4]V-sete7dz841 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
Q [auth 3]V-sete7dz831 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
P [auth 2]MIFe7dz821 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: MIFECOD (v295.2)
O [auth a]V-sete7dz8a1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
N [auth 1]V-sete7dz811 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
LV-sete7dz8L1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
KV-sete7dz8K1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
JV-sete7dz8J1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)
AV-sete7dz8A1 A: alpha arraysX: putative RnfG subunit of electron transport complexH: putative RnfG subunit of electron transport complexT: Aspartate/ornithine carbamoyltransferaseF: V-setECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem I reaction center subunit VIII-
Photosystem I reaction center subunit VI, chloroplastic-
Photosystem I reaction center subunit V, chloroplastic-
Photosystem I reaction center subunit III, chloroplastic-
Photosystem I reaction center subunit IV, chloroplastic-
Photosystem I reaction center subunit II, chloroplastic-
Photosystem I iron-sulfur center
BA [auth V]Chlorophyll a-b binding protein, chloroplastic-
AA [auth U],
Y,
Z
Chlorophyll a-b binding protein, chloroplastic-
CA [auth W],
X
Chlorophyll a-b binding protein, chloroplastic-
W [auth 9]Chlorophyll a-b binding protein, chloroplastic-
V [auth 8]Chlorophyll a-b binding protein, chloroplastic-
U [auth 7]Chlorophyll a-b binding protein, chloroplastic-
Photosystem I P700 chlorophyll a apoprotein A2
T [auth 6]Chlorophyll a-b binding protein, chloroplastic-
S [auth 5]Chlorophyll a-b binding protein, chloroplastic-
R [auth 4]Chlorophyll a-b binding protein, chloroplastic-
Q [auth 3]Chlorophyll a-b binding protein, chloroplastic---
P [auth 2]Chlorophyll a-b binding protein, chloroplastic-
N [auth 1],
O [auth a]
Chlorophyll a-b binding protein, chloroplastic-
M [auth O]Photosystem I subunit O- - -
PSI subunit V-
Photosystem I reaction center subunit psaK, chloroplastic-
Photosystem I reaction center subunit IX-
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
IPR001302Photosystem I reaction centre subunit VIIIFamily
IPR004928Photosystem I PsaH, reaction centre subunit VIFamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR017494Photosystem I reaction center subunit VFamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR050157Photosystem I iron-sulfur centerFamily
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
BA [auth V]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
BA [auth V]IPR022796Chlorophyll A-B binding proteinFamily
AA [auth U],
Y,
Z
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
AA [auth U],
Y,
Z
IPR022796Chlorophyll A-B binding proteinFamily
CA [auth W],
X
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
CA [auth W],
X
IPR022796Chlorophyll A-B binding proteinFamily
W [auth 9]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
W [auth 9]IPR022796Chlorophyll A-B binding proteinFamily
V [auth 8]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
V [auth 8]IPR022796Chlorophyll A-B binding proteinFamily
U [auth 7]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
U [auth 7]IPR022796Chlorophyll A-B binding proteinFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
T [auth 6]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
T [auth 6]IPR022796Chlorophyll A-B binding proteinFamily
S [auth 5]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
S [auth 5]IPR022796Chlorophyll A-B binding proteinFamily
R [auth 4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
R [auth 4]IPR022796Chlorophyll A-B binding proteinFamily
P [auth 2]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
P [auth 2]IPR022796Chlorophyll A-B binding proteinFamily
N [auth 1],
O [auth a]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
N [auth 1],
O [auth a]
IPR022796Chlorophyll A-B binding proteinFamily
M [auth O]IPR017498Photosystem I PsaOFamily
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
IPR022980Photosystem I, reaction centre subunit XIFamily
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR017493Photosystem I reaction center subunit psaK, plantFamily
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
IPR006243Photosystem I PsaAFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
BA [auth V]TPO Parent Component: THR

AA0038

:  O-phospho-L-threonine MOD:00047