7FBI
Cryo-EM structure of EBV gB in complex with nAbs 3A3 and 3A5
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth H] | V-set_8 | e7fbiH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
B [auth L] | V-set | e7fbiL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
C [auth A] | Glycoprot_B_PH1 | e7fbiA3 | A: beta barrels | X: PH domain-like | H: first barrel domain in viral glycoproteins (From Topology) | T: first barrel domain in viral glycoproteins | F: Glycoprot_B_PH1 | ECOD (1.6) |
C [auth A] | Glycoprot_B_PH2 | e7fbiA2 | A: beta barrels | X: PH domain-like | H: second barrel domain in viral glycoproteins (From Topology) | T: second barrel domain in viral glycoproteins | F: Glycoprot_B_PH2 | ECOD (1.6) |
C [auth A] | Glycoprotein_B | e7fbiA1 | A: beta complex topology | X: Viral glycoprotein ectodomain-like (From Topology) | H: Viral glycoprotein ectodomain-like (From Topology) | T: Viral glycoprotein ectodomain-like | F: Glycoprotein_B | ECOD (1.6) |
D [auth M] | V-set | e7fbiM1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
E [auth N] | V-set_12 | e7fbiN1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_12 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
B [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth H] | Heavy Chain | IGHV1 | - | envelope glycoprotein b | SAbDab (2025-02-28) |
B [auth L] | Light Chain | IGKV1 | Kappa | envelope glycoprotein b | SAbDab (2025-02-28) |
D [auth M] | Light Chain | IGKV1 | Kappa | envelope glycoprotein b | SAbDab (2025-02-28) |
E [auth N] | Heavy Chain | IGHV1 | - | envelope glycoprotein b | SAbDab (2025-02-28) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A] | PF00606 | Herpesvirus Glycoprotein B ectodomain (Glycoprotein_B) | Herpesvirus Glycoprotein B ectodomain | This domain corresponds to the ectodomain of glycoprotein B according to ECOD. | Domain |
C [auth A] | PF17417 | Herpesvirus Glycoprotein B PH-like domain (Glycoprot_B_PH2) | Herpesvirus Glycoprotein B PH-like domain | This domain corresponds to the second PH-like domain in herpesvirus glycoprotein B. | Domain |
C [auth A] | PF17416 | Herpesvirus Glycoprotein B (Glycoprot_B_PH1) | Herpesvirus Glycoprotein B | This domain has a PH-like fold. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth H] | 3A3 heavy chain | - | - | - |
B [auth L] | 3A3 light chain | - | - | - |
C [auth A] | Envelope glycoprotein B | - |
| |
D [auth M] | 3A5 light chain | - | - | - |
E [auth N] | 3A5 heavy chain | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A] | IPR000234 | Herpesvirus Glycoprotein B | Family |
C [auth A] | IPR035381 | Herpesvirus Glycoprotein B, PH-like domain 2 | Domain |
C [auth A] | IPR035377 | Herpesvirus Glycoprotein B, PH-like domain 1 | Domain |
C [auth A] | IPR038631 | Herpesvirus Glycoprotein B, PH-like domain 2 superfamily | Homologous Superfamily |