7JRN
Crystal structure of the wild type SARS-CoV-2 papain-like protease (PLPro) with inhibitor GRL0617
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d7jrna2 | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | Papain-like viral protease catalytic domain | automated matches | 2019-nCoV (Severe acute respiratory syndrome coronavirus 2 ) [TaxId: 2697049 ], | SCOPe (2.08) |
A | d7jrna1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | automated matches | automated matches | 2019-nCoV (Severe acute respiratory syndrome coronavirus 2 ) [TaxId: 2697049 ], | SCOPe (2.08) |
B [auth J] | d7jrnj2 | Alpha and beta proteins (a+b) | Cysteine proteinases | Cysteine proteinases | Papain-like viral protease catalytic domain | automated matches | 2019-nCoV (Severe acute respiratory syndrome coronavirus 2 ) [TaxId: 2697049 ], | SCOPe (2.08) |
B [auth J] | d7jrnj1 | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | automated matches | automated matches | 2019-nCoV (Severe acute respiratory syndrome coronavirus 2 ) [TaxId: 2697049 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Cysteine proteinases | 8092567 | 3001808 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ubiquitin-like | 8092569 | 3000157 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | PLpro Zn-binding domain-like | 8092568 | 3002538 | SCOP2B (2022-06-29) |
B [auth J] | SCOP2B Superfamily | PLpro Zn-binding domain-like | 8092568 | 3002538 | SCOP2B (2022-06-29) |
B [auth J] | SCOP2B Superfamily | Ubiquitin-like | 8092569 | 3000157 | SCOP2B (2022-06-29) |
B [auth J] | SCOP2B Superfamily | Cysteine proteinases | 8092567 | 3001808 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Viral_protease_N | e7jrnA2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Viral_protease_N | ECOD (1.6) |
A | Viral_protease_C | e7jrnA1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Viral_protease_C | ECOD (1.6) |
B [auth J] | Viral_protease_N | e7jrnJ2 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: Viral_protease_N | ECOD (1.6) |
B [auth J] | Viral_protease_C | e7jrnJ1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Viral_protease_C | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth J] | PF08715 | Coronavirus papain-like peptidase (CoV_peptidase) | Coronavirus papain-like peptidase | - | Family |