7JZV | pdb_00007jzv

Cryo-EM structure of the BRCA1-UbcH5c/BARD1 E3-E2 module bound to a nucleosome

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth q]	SCOP2B Superfamily	Core histone-like	8070545	3001387	SCOP2B (2022-06-29)
F [auth Q]	SCOP2B Superfamily	Core histone-like	8070545	3001387	SCOP2B (2022-06-29)
K [auth p]	SCOP2B Superfamily	Core histone-like	8070531	3001387	SCOP2B (2022-06-29)
E [auth P]	SCOP2B Superfamily	Core histone-like	8070531	3001387	SCOP2B (2022-06-29)
J [auth o]	SCOP2B Superfamily	Core histone-like	8039341	3001387	SCOP2B (2022-06-29)
D [auth O]	SCOP2B Superfamily	Core histone-like	8039341	3001387	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	RING/U-box like	8004136	3000160	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	RING/U-box like	8037158	3000160	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	UBC-like	8033550	3000570	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth q]	CENP-T_C	e7jzvq1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CENP-T_C	ECOD (v294.1)
F [auth Q]	CENP-T_C	e7jzvQ1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CENP-T_C	ECOD (v294.1)
K [auth p]	CENP-T_C	e7jzvp1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CENP-T_C	ECOD (v294.1)
E [auth P]	CENP-T_C	e7jzvP1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CENP-T_C	ECOD (v294.1)
J [auth o]	CENP-T_C	e7jzvo1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CENP-T_C	ECOD (v294.1)
D [auth O]	CENP-T_C	e7jzvO1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CENP-T_C	ECOD (v294.1)
I [auth n]	CENP-T_C	e7jzvn1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CENP-T_C	ECOD (v294.1)
C [auth N]	CENP-T_C	e7jzvN1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CENP-T_C	ECOD (v294.1)
B	CENP-T_C	e7jzvB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CENP-T_C	ECOD (v294.1)
A	CENP-T_C	e7jzvA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: CENP-T_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (utative)
A	3.10.110.10	Alpha Beta	Roll	Ubiquitin Conjugating Enzyme	Ubiquitin Conjugating Enzyme	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F [auth Q], L [auth q]	PF15511	Centromere kinetochore component CENP-T histone fold (CENP-T_C)	Centromere kinetochore component CENP-T histone fold	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...	CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].	Domain
C [auth N], I [auth n]	PF16211	C-terminus of histone H2A (Histone_H2A_C)	C-terminus of histone H2A	-	Family
B	PF14835	zf-RING of BARD1-type protein (zf-RING_6)	zf-RING of BARD1-type protein	The RING domain of the breast and ovarian cancer tumour-suppressor BRCA1 interacts with multiple cognate proteins, including the RING protein BARD1. Proper function of the BRCA1 RING domain is critical, as evidenced by the many cancer-predisposing mu ...	The RING domain of the breast and ovarian cancer tumour-suppressor BRCA1 interacts with multiple cognate proteins, including the RING protein BARD1. Proper function of the BRCA1 RING domain is critical, as evidenced by the many cancer-predisposing mutations found within this domain. A dimer is formed between the RING domains of BRCA1 and BARD1. The BRCA1-BARD1 structure provides a model for its ubiquitin ligase activity, illustrates how the BRCA1 RING domain can be involved in associations with multiple protein partners and provides a framework for understanding cancer-causing mutations at the molecular level [1]. The corresponding BRCA1-RING domain is on family zf-C3HC4_2, Pfam:PF13923.	Domain
A	PF00097	Zinc finger, C3HC4 type (RING finger) (zf-C3HC4)	Zinc finger, C3HC4 type (RING finger)	The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many protein ...	The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many proteins containing a RING finger play a key role in the ubiquitination pathway [2].	Domain
A	PF00179	Ubiquitin-conjugating enzyme (UQ_con)	Ubiquitin-conjugating enzyme	Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cystein ...	Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine [4, 5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H [auth Y]	Widom 601 153-bp	-	-	-
G [auth X]	Widom 601 153-bp	-	-	-
F [auth Q], L [auth q]	Histone H4	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity RNA binding structural molecule activity structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization organelle organization protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization organelle organization telomere organization chromosome organization localization protein localization to chromatin protein localization to chromosome protein localization to chromosome, centromeric region protein localization to organelle macromolecule localization protein localization to CENP-A containing chromatin intracellular protein localization multicellular organismal process regulation of cellular process regulation of developmental process cellular developmental process regulation of megakaryocyte differentiation negative regulation of biological process cell development megakaryocyte differentiation regulation of cell differentiation regulation of cell development multicellular organism development negative regulation of megakaryocyte differentiation cell differentiation negative regulation of cellular process anatomical structure development negative regulation of cell differentiation regulation of immune system process regulation of multicellular organismal process developmental process regulation of biological process regulation of multicellular organismal development negative regulation of developmental process hemopoiesis regulation of myeloid cell differentiation biological regulation negative regulation of myeloid cell differentiation myeloid cell differentiation immune system process regulation of hemopoiesis	cellular anatomical structure membrane extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle extracellular space vesicle extracellular membrane-bounded organelle protein-containing complex intracellular anatomical structure CENP-A containing chromatin cellular anatomical structure membrane extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle extracellular space vesicle extracellular membrane-bounded organelle protein-containing complex intracellular anatomical structure CENP-A containing chromatin protein-DNA complex intracellular membraneless organelle nucleosome chromosome chromatin chromosomal region intracellular organelle chromosome, centromeric core domain CENP-A containing nucleosome membraneless organelle chromosome, centromeric region chromosome, telomeric region nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
E [auth P], K [auth p]	Histone H3.2	DNA binding binding nucleic acid binding chromatin binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization biosynthetic process protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization biosynthetic process metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of cellular process negative regulation of biological process RNA metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription regulation of biological process negative regulation of transcription by RNA polymerase II negative regulation of metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process	cellular anatomical structure extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle extracellular space vesicle extracellular membrane-bounded organelle protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome cellular anatomical structure extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle extracellular space vesicle extracellular membrane-bounded organelle protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle membraneless organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
D [auth O], J [auth o]	Histone H2B type 1-K	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	biological process involved in interspecies interaction between organisms innate immune response in mucosa response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus biological process involved in interspecies interaction between organisms innate immune response in mucosa response to stimulus immune response response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus immune system process defense response to other organism response to stress innate immune response response to external biotic stimulus mucosal immune response organ or tissue specific immune response humoral immune response antimicrobial humoral response antimicrobial humoral immune response mediated by antimicrobial peptide cellular process disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing defense response to Gram-negative bacterium defense response to bacterium response to bacterium antibacterial humoral response defense response to Gram-positive bacterium	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle organelle membraneless organelle extracellular region cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle organelle membraneless organelle extracellular region extracellular space membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
C [auth N], I [auth n]	Histone H2A type 2-A	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity structural molecule activity structural constituent of chromatin	regulation of cellular process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression regulation of cellular process negative regulation of biological process cellular component organization cellular component biogenesis cellular component assembly chromatin organization negative regulation of cellular process chromatin remodeling cellular component organization or biogenesis negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process biological regulation heterochromatin organization regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process cellular process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process	protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle extracellular exosome membrane-bounded organelle extracellular vesicle protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle cellular anatomical structure organelle membraneless organelle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B	BRCA1-associated RING domain protein 1	aminoacyltransferase activity histone H2A ubiquitin ligase activity catalytic activity, acting on a protein acyltransferase activity transferase activity histone ubiquitin ligase activity ubiquitin-protein transferase activity ubiquitin-like protein transferase activity histone H2AK129 ubiquitin ligase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity histone modifying activity catalytic activity histone H2AK127 ubiquitin ligase activity aminoacyltransferase activity histone H2A ubiquitin ligase activity catalytic activity, acting on a protein acyltransferase activity transferase activity histone ubiquitin ligase activity ubiquitin-protein transferase activity ubiquitin-like protein transferase activity histone H2AK129 ubiquitin ligase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity histone modifying activity catalytic activity histone H2AK127 ubiquitin ligase activity ubiquitin-modified protein reader activity ubiquitin-modified histone reader activity histone reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity ubiquitin-like protein reader activity molecular adaptor activity protein heterodimerization activity protein binding binding protein dimerization activity RNA binding nucleic acid binding kinase binding enzyme binding identical protein binding protein homodimerization activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of biological process regulation of cellular process phosphorylation biological regulation phosphate-containing compound metabolic process regulation of phosphorylation regulation of phosphorus metabolic process metabolic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of biological process regulation of cellular process phosphorylation biological regulation phosphate-containing compound metabolic process regulation of phosphorylation regulation of phosphorus metabolic process metabolic process phosphorus metabolic process regulation of metabolic process negative regulation of protein transport regulation of localization establishment of protein localization negative regulation of nucleocytoplasmic transport nucleocytoplasmic transport nuclear transport negative regulation of biological process negative regulation of intracellular protein transport negative regulation of transport localization establishment of localization in cell intracellular protein localization nuclear export regulation of protein export from nucleus regulation of intracellular transport negative regulation of establishment of protein localization intracellular transport regulation of nucleocytoplasmic transport protein localization to nucleus protein export from nucleus establishment of localization maintenance of location regulation of intracellular protein transport intracellular protein transport maintenance of protein location cellular localization regulation of protein localization transport maintenance of location in cell maintenance of protein location in cell negative regulation of cellular process negative regulation of protein export from nucleus negative regulation of protein localization negative regulation of intracellular transport regulation of transport regulation of establishment of protein localization maintenance of protein location in nucleus regulation of protein transport protein transport regulation of cellular localization macromolecule localization protein localization to organelle maintenance of protein localization in organelle negative regulation of cell cycle cell cycle regulation of cell cycle positive regulation of programmed cell death regulation of apoptotic process positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process response to ionizing radiation cellular response to ionizing radiation response to radiation response to abiotic stimulus cellular response to radiation cellular response to abiotic stimulus cellular response to environmental stimulus nucleobase-containing compound metabolic process homologous recombination DNA recombination primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process protein ubiquitination macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal DNA damage checkpoint signaling regulation of cell cycle phase transition signaling regulation of cellular response to stress cell cycle phase transition regulation of signal transduction intracellular signal transduction cell communication regulation of cell cycle checkpoint regulation of intracellular signal transduction regulation of response to stress negative regulation of cell cycle phase transition signal transduction cell cycle process regulation of signaling regulation of cell cycle process DNA integrity checkpoint signaling negative regulation of cell cycle process cell cycle checkpoint signaling regulation of response to stimulus signal transduction in response to DNA damage regulation of cell communication regulation of DNA damage checkpoint protein K6-linked ubiquitination protein polyubiquitination DNA repair G2/M transition of mitotic cell cycle mitotic cell cycle negative regulation of mitotic cell cycle mitotic G2/M transition checkpoint regulation of mitotic cell cycle cell cycle G2/M phase transition negative regulation of mitotic cell cycle phase transition regulation of G2/M transition of mitotic cell cycle regulation of cell cycle G2/M phase transition regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling mitotic cell cycle process negative regulation of cell cycle G2/M phase transition negative regulation of G2/M transition of mitotic cell cycle mitotic cell cycle phase transition regulation of primary metabolic process regulation of nucleobase-containing compound metabolic process regulation of macromolecule metabolic process regulation of DNA repair regulation of DNA metabolic process negative regulation of programmed cell death negative regulation of apoptotic process catabolic process positive regulation of protein metabolic process macromolecule catabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of protein metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process regulation of protein catabolic process DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity DNA replication DNA strand resection involved in replication fork processing replication fork processing negative regulation of mRNA 3'-end processing RNA metabolic process mRNA processing RNA biosynthetic process nucleic acid biosynthetic process negative regulation of mRNA metabolic process regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process RNA 3'-end processing RNA processing negative regulation of mRNA processing negative regulation of macromolecule metabolic process regulation of mRNA processing negative regulation of metabolic process mRNA 3'-end processing regulation of mRNA 3'-end processing gene expression nucleobase-containing compound biosynthetic process mRNA metabolic process macromolecule biosynthetic process biosynthetic process regulation of mRNA metabolic process negative regulation of RNA metabolic process multicellular organismal process multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis DNA-templated transcription transcription by RNA polymerase II regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription cellular component organization chromatin organization chromatin remodeling cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure BRCA1-C complex organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear speck membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure BRCA1-C complex organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle membrane-enclosed lumen intracellular membraneless organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule nuclear body nucleoplasm organelle lumen membraneless organelle supramolecular complex nuclear ribonucleoprotein granule nuclear lumen cytoplasm ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex nuclear ubiquitin ligase complex BRCA1-BARD1 complex BRCA1-A complex BRCA1-B complex cytoplasmic ribonucleoprotein granule
A	BRCA1,Ubiquitin-conjugating enzyme E2 D3	aminoacyltransferase activity histone H2A ubiquitin ligase activity catalytic activity, acting on a protein acyltransferase activity transferase activity histone ubiquitin ligase activity ubiquitin-protein transferase activity ubiquitin-like protein transferase activity histone H2AK129 ubiquitin ligase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity histone modifying activity catalytic activity DNA binding aminoacyltransferase activity histone H2A ubiquitin ligase activity catalytic activity, acting on a protein acyltransferase activity transferase activity histone ubiquitin ligase activity ubiquitin-protein transferase activity ubiquitin-like protein transferase activity histone H2AK129 ubiquitin ligase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity histone modifying activity catalytic activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding ubiquitin protein ligase binding protein binding ubiquitin-like protein ligase binding enzyme binding identical protein binding histone H2AK127 ubiquitin ligase activity p53 binding ubiquitin-modified protein reader activity ubiquitin-modified histone reader activity histone reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity ubiquitin-like protein reader activity molecular adaptor activity cytoskeletal protein binding tubulin binding transcription coactivator activity transcription regulator activity transcription coregulator activity RNA polymerase binding RNA binding damaged DNA binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding ubiquitin conjugating enzyme activity ubiquitin-like protein conjugating enzyme activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process primary metabolic process DNA metabolic process DNA damage tolerance nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process macromolecule metabolic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process primary metabolic process DNA metabolic process DNA damage tolerance nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process macromolecule metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process positive regulation of macromolecule metabolic process regulation of metabolic process positive regulation of cellular process cell cycle chromosome segregation cell cycle process extrinsic apoptotic signaling pathway via death domain receptors signaling negative regulation of signaling negative regulation of biological process regulation of signal transduction regulation of programmed cell death extrinsic apoptotic signaling pathway negative regulation of cell communication cell communication negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway negative regulation of cellular process signal transduction regulation of signaling cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process negative regulation of extrinsic apoptotic signaling pathway via death domain receptors cell death negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway negative regulation of apoptotic process regulation of response to stimulus regulation of extrinsic apoptotic signaling pathway via death domain receptors regulation of cell communication apoptotic process programmed cell death regulation of apoptotic signaling pathway negative regulation of cell cycle regulation of cell cycle protein autoubiquitination protein ubiquitination macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal response to ionizing radiation cellular response to ionizing radiation response to radiation response to abiotic stimulus cellular response to radiation cellular response to abiotic stimulus cellular response to environmental stimulus regulation of growth regulation of cellular component organization growth negative regulation of cell growth regulation of cell growth cell growth cellular component organization negative regulation of growth cellular component organization or biogenesis homologous recombination DNA recombination regulation of cytoskeleton organization negative regulation of centriole replication microtubule cytoskeleton organization membraneless organelle assembly negative regulation of organelle assembly cellular component biogenesis centrosome duplication negative regulation of centrosome cycle cellular component assembly centrosome cycle negative regulation of centrosome duplication regulation of centriole replication centriole replication centriole assembly microtubule organizing center organization organelle assembly negative regulation of cellular component organization regulation of cell cycle process negative regulation of cytoskeleton organization regulation of centrosome cycle regulation of microtubule-based process negative regulation of cell cycle process regulation of cellular component biogenesis regulation of organelle organization organelle organization negative regulation of organelle organization regulation of centrosome duplication regulation of organelle assembly microtubule-based process cytoskeleton organization regulation of cellular response to stress regulation of primary metabolic process positive regulation of response to stimulus positive regulation of DNA repair regulation of response to stress regulation of nucleobase-containing compound metabolic process DNA repair regulation of DNA repair positive regulation of DNA metabolic process regulation of DNA metabolic process DNA damage checkpoint signaling regulation of cell cycle phase transition cell cycle phase transition intracellular signal transduction regulation of cell cycle checkpoint regulation of intracellular signal transduction negative regulation of cell cycle phase transition DNA integrity checkpoint signaling cell cycle checkpoint signaling signal transduction in response to DNA damage regulation of DNA damage checkpoint protein K6-linked ubiquitination protein polyubiquitination negative regulation of metabolic process reactive oxygen species metabolic process negative regulation of reactive oxygen species metabolic process regulation of reactive oxygen species metabolic process intracellular receptor signaling pathway response to lipid negative regulation of intracellular signal transduction hormone-mediated signaling pathway negative regulation of intracellular steroid hormone receptor signaling pathway cellular response to endogenous stimulus response to hormone response to steroid hormone regulation of intracellular steroid hormone receptor signaling pathway regulation of intracellular estrogen receptor signaling pathway nuclear receptor-mediated steroid hormone signaling pathway cellular response to steroid hormone stimulus negative regulation of intracellular estrogen receptor signaling pathway steroid hormone receptor signaling pathway cellular response to hormone stimulus response to endogenous stimulus estrogen receptor signaling pathway cellular response to chemical stimulus response to chemical cellular response to lipid nuclear receptor-mediated signaling pathway G2/M transition of mitotic cell cycle mitotic cell cycle negative regulation of mitotic cell cycle mitotic G2/M transition checkpoint regulation of mitotic cell cycle cell cycle G2/M phase transition negative regulation of mitotic cell cycle phase transition regulation of G2/M transition of mitotic cell cycle regulation of cell cycle G2/M phase transition regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling mitotic cell cycle process negative regulation of cell cycle G2/M phase transition negative regulation of G2/M transition of mitotic cell cycle mitotic cell cycle phase transition positive regulation of DNA-templated transcription RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription chromatin organization chromatin remodeling negative regulation of macromolecule metabolic process random inactivation of X chromosome heterochromatin formation sex-chromosome dosage compensation epigenetic regulation of gene expression heterochromatin organization negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process dosage compensation by inactivation of X chromosome negative regulation of gene expression, epigenetic negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription negative regulation of RNA metabolic process negative regulation of gene expression via chromosomal CpG island methylation multicellular organismal process regulation of cytokine production cytokine production regulation of multicellular organismal process regulation of vascular endothelial growth factor production vascular endothelial growth factor production positive regulation of multicellular organismal process positive regulation of vascular endothelial growth factor production positive regulation of cytokine production response to peptide cellular response to tumor necrosis factor response to cytokine cellular response to cytokine stimulus response to tumor necrosis factor DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity DNA strand resection involved in replication fork processing replication fork processing developmental process multicellular organism development embryo development ending in birth or egg hatching chordate embryonic development anatomical structure development embryo development intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process mitotic G2 DNA damage checkpoint signaling mitotic DNA integrity checkpoint signaling mitotic DNA damage checkpoint signaling double-strand break repair recombinational repair double-strand break repair via homologous recombination regulation of developmental process angiogenesis regulation of vasculature development positive regulation of developmental process tube morphogenesis regulation of anatomical structure morphogenesis blood vessel development system development regulation of multicellular organismal development blood vessel morphogenesis tube development positive regulation of angiogenesis vasculature development circulatory system development anatomical structure morphogenesis positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis cellular response to nitrogen compound response to alcohol response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to alcohol response to indole-3-methanol cellular response to indole-3-methanol negative regulation of small molecule metabolic process ketone metabolic process regulation of lipid metabolic process negative regulation of lipid biosynthetic process regulation of small molecule metabolic process negative regulation of fatty acid biosynthetic process negative regulation of fatty acid metabolic process regulation of ketone metabolic process regulation of fatty acid metabolic process regulation of fatty acid biosynthetic process regulation of lipid biosynthetic process negative regulation of lipid metabolic process cell surface receptor protein serine/threonine kinase signaling pathway cellular response to growth factor stimulus regulation of transmembrane receptor protein serine/threonine kinase signaling pathway negative regulation of cellular response to growth factor stimulus negative regulation of BMP signaling pathway BMP signaling pathway enzyme-linked receptor protein signaling pathway cellular response to BMP stimulus regulation of BMP signaling pathway regulation of cellular response to growth factor stimulus response to BMP transforming growth factor beta receptor superfamily signaling pathway response to growth factor negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process protein K11-linked ubiquitination protein K48-linked ubiquitination negative regulation of transcription by RNA polymerase II protein monoubiquitination	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure BRCA1-C complex organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle catalytic complex DNA repair complex XY body sex chromosome membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure BRCA1-C complex organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle catalytic complex DNA repair complex XY body sex chromosome membraneless organelle intracellular membraneless organelle chromosome cytoplasm male germ cell nucleus germ cell nucleus ubiquitin ligase complex transferase complex intracellular protein-containing complex nuclear ubiquitin ligase complex BRCA1-BARD1 complex cell periphery plasma membrane membrane membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen BRCA1-A complex BRCA1-B complex condensed nuclear chromosome nuclear chromosome lateral element synaptonemal structure synaptonemal complex condensed chromosome gamma-tubulin ring complex gamma-tubulin complex microtubule organizing center cytoskeleton microtubule cytoskeleton ribonucleoprotein complex nuclear body extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle cytosol endosome membrane endosome intracellular vesicle endomembrane system cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth Q], L [auth q]	IPR009072	Histone-fold	Homologous Superfamily
F [auth Q], L [auth q]	IPR035425	CENP-T/Histone H4, histone fold	Domain
F [auth Q], L [auth q]	IPR001951	Histone H4	Family
F [auth Q], L [auth q]	IPR019809	Histone H4, conserved site	Conserved Site
F [auth Q], L [auth q]	IPR004823	TATA box binding protein associated factor (TAF), histone-like fold domain	Domain
E [auth P], K [auth p]	IPR009072	Histone-fold	Homologous Superfamily
E [auth P], K [auth p]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
E [auth P], K [auth p]	IPR000164	Histone H3/CENP-A	Family
D [auth O], J [auth o]	IPR009072	Histone-fold	Homologous Superfamily
D [auth O], J [auth o]	IPR000558	Histone H2B	Family
D [auth O], J [auth o]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
D [auth O], J [auth o]	IPR055333	Histone H2B, conserved site	Conserved Site
C [auth N], I [auth n]	IPR009072	Histone-fold	Homologous Superfamily
C [auth N], I [auth n]	IPR002119	Histone H2A	Family
C [auth N], I [auth n]	IPR032454	Histone H2A, C-terminal domain	Domain
C [auth N], I [auth n]	IPR032458	Histone H2A conserved site	Conserved Site
C [auth N], I [auth n]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
B	IPR039503	BARD1, Zinc finger, RING-type	Domain
B	IPR002110	Ankyrin repeat	Repeat
B	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
B	IPR001841	Zinc finger, RING-type	Domain
B	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
B	IPR001357	BRCT domain	Domain
B	IPR036420	BRCT domain superfamily	Homologous Superfamily
B	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
A	IPR031099	BRCA1-associated	Family
A	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A	IPR025994	BRCA1, serine-rich domain	Domain
A	IPR001841	Zinc finger, RING-type	Domain
A	IPR011364	Breast cancer type 1 susceptibility protein (BRCA1)	Family
A	IPR001357	BRCT domain	Domain
A	IPR036420	BRCT domain superfamily	Homologous Superfamily
A	IPR018957	Zinc finger, C3HC4 RING-type	Domain
A	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
A	IPR016135	Ubiquitin-conjugating enzyme/RWD-like	Homologous Superfamily
A	IPR000608	Ubiquitin-conjugating (UBC), catalytic core domain	Domain
A	IPR023313	Ubiquitin-conjugating enzyme, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
F [auth Q], L [auth q]	Pharos: P62805	lung carcinoma Malignant neoplasm of breast non-small cell lung carcinoma Pick disease acute myeloid leukemia squamous cell lung carcinoma atypical teratoid rhabdoid tumor breast carcinoma ductal breast carcinoma in situ exocrine pancreatic carcinoma hepatocellular carcinoma lung adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm osteoarthritis lung carcinoma Malignant neoplasm of breast non-small cell lung carcinoma Pick disease acute myeloid leukemia squamous cell lung carcinoma atypical teratoid rhabdoid tumor breast carcinoma ductal breast carcinoma in situ exocrine pancreatic carcinoma hepatocellular carcinoma lung adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm osteoarthritis pilocytic astrocytoma allergic rhinitis ulcerative colitis autism spectrum disorder cystic fibrosis endogenous depression glioblastoma hypertensive disorder lung cancer malignant mesothelioma multiple sclerosis osteosarcoma psoriasis astrocytic tumor breast cancer diabetes mellitus endometriosis gout invasive ductal breast carcinoma
E [auth P], K [auth p]	Pharos: Q71DI3	idiopathic scoliosis
D [auth O], J [auth o]	Pharos: O60814	breast carcinoma autism spectrum disorder endogenous depression Mammary Neoplasms, Human breast cancer
C [auth N], I [auth n]	Pharos: Q6FI13	breast cancer idiopathic scoliosis primary hyperoxaluria type 1
B	Pharos: Q99728	neuroblastoma breast carcinoma hereditary breast carcinoma hereditary breast ovarian cancer syndrome ovarian cancer breast cancer malignant ependymoma Malignant neoplasm of breast adrenal cortex carcinoma oligodendroglioma atypical teratoid rhabdoid tumor ovarian carcinoma pancreatic ductal adenocarcinoma dermatomyositis pilocytic astrocytoma neuroblastoma breast carcinoma hereditary breast carcinoma hereditary breast ovarian cancer syndrome ovarian cancer breast cancer malignant ependymoma Malignant neoplasm of breast adrenal cortex carcinoma oligodendroglioma atypical teratoid rhabdoid tumor ovarian carcinoma pancreatic ductal adenocarcinoma dermatomyositis pilocytic astrocytoma uterine cancer large cell medulloblastoma malignant glioma medulloblastoma amyotrophic lateral sclerosis osteosarcoma breast adenocarcinoma ovarian clear cell adenocarcinoma cancer pancreatic intraductal papillary-mucinous carcinoma ductal breast carcinoma in situ primitive neuroectodermal tumor lung carcinoma malignant mesothelioma non-small cell lung carcinoma astrocytic tumor ovarian neoplasm cutaneous lupus erythematosus pancreatic intraductal papillary-mucinous neoplasm glioblastoma subependymal giant cell astrocytoma invasive ductal breast carcinoma
A	Pharos: P61077	prostate cancer ovarian cancer breast cancer breast-ovarian cancer, familial, susceptibility to, 1 hereditary breast ovarian cancer syndrome cancer carcinoma Mammary Neoplasms, Experimental adenoid cystic carcinoma mouth disease salivary gland adenoid cystic carcinoma malignant pancreatic neoplasm exocrine pancreatic carcinoma ovarian carcinoma lung cancer prostate cancer ovarian cancer breast cancer breast-ovarian cancer, familial, susceptibility to, 1 hereditary breast ovarian cancer syndrome cancer carcinoma Mammary Neoplasms, Experimental adenoid cystic carcinoma mouth disease salivary gland adenoid cystic carcinoma malignant pancreatic neoplasm exocrine pancreatic carcinoma ovarian carcinoma lung cancer breast carcinoma sarcomatoid carcinoma sporadic breast cancer colorectal cancer depressive disorder fallopian tube cancer Fanconi anemia hereditary breast carcinoma ovarian neoplasm benign neoplasm of pancreas Li-Fraumeni syndrome pancreatic intraductal papillary-mucinous neoplasm peripheral neuropathy Lynch syndrome primitive neuroectodermal tumor malignant mesothelioma schizophrenia undifferentiated carcinoma congenital anemia familial pancreatic carcinoma Fanconi anemia complementation group A non-small cell lung carcinoma glioblastoma BAP1-related tumor predisposition syndrome pancreatic cancer, susceptibility to, 4 breast adenocarcinoma lung adenocarcinoma pancreatic neoplasm peritoneal carcinoma malignant colon neoplasm prostate adenocarcinoma serous adenocarcinoma mammary neoplasms, animal medulloblastoma nasopharyngeal carcinoma familial prostate carcinoma Fanconi anemia, complementation group S osteosarcoma anemia hematopoietic and lymphoid system neoplasm benign neoplasm large cell medulloblastoma pancreatic intraductal papillary-mucinous carcinoma peripheral nervous system disease primary peritoneal carcinoma malignant ependymoma cholangiocarcinoma pancreatic intraductal papillary-mucinous neoplasm pituitary cancer rheumatoid arthritis astrocytic tumor autism spectrum disorder endogenous depression IgA glomerulonephritis malignant ependymoma non-small cell lung carcinoma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia plasma cell myeloma attention deficit hyperactivity disorder, inattentive type Down syndrome esophageal adenocarcinoma juvenile dermatomyositis medulloblastoma oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma Pick disease progressive supranuclear palsy atypical teratoid rhabdoid tumor Emery-Dreifuss muscular dystrophy glioblastoma large cell medulloblastoma myopathy ovarian cancer