7M05
CryoEM structure of PRMT5 bound to covalent PBM-site inhibitor BRD-6988
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Xylose isomerase-like | 8053408 | 3000560 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Arginine methyltransferase C-terminal oligomerisation domain-like | 8046793 | 3002184 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8053402 | 3000118 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Arginine methyltransferase C-terminal oligomerisation domain-like | 8046793 | 3002184 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8053402 | 3000118 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Xylose isomerase-like | 8053408 | 3000560 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Xylose isomerase-like | 8053408 | 3000560 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Arginine methyltransferase C-terminal oligomerisation domain-like | 8046793 | 3002184 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8053402 | 3000118 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Xylose isomerase-like | 8053408 | 3000560 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | S-adenosyl-L-methionine-dependent methyltransferases | 8053402 | 3000118 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Arginine methyltransferase C-terminal oligomerisation domain-like | 8046793 | 3002184 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PRMT5_C | e7m05A3 | A: beta sandwiches | X: Arginine methyltransferase oligomerization subdomain (From Topology) | H: Arginine methyltransferase oligomerization subdomain (From Topology) | T: Arginine methyltransferase oligomerization subdomain | F: PRMT5_C | ECOD (1.6) |
A | PRMT5_TIM | e7m05A2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PRMT5_TIM | ECOD (1.6) |
A | PRMT5 | e7m05A1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PRMT5 | ECOD (1.6) |
E | PRMT5_C | e7m05E1 | A: beta sandwiches | X: Arginine methyltransferase oligomerization subdomain (From Topology) | H: Arginine methyltransferase oligomerization subdomain (From Topology) | T: Arginine methyltransferase oligomerization subdomain | F: PRMT5_C | ECOD (1.6) |
E | PRMT5_TIM | e7m05E2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PRMT5_TIM | ECOD (1.6) |
E | PRMT5 | e7m05E3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PRMT5 | ECOD (1.6) |
C | PRMT5_C | e7m05C3 | A: beta sandwiches | X: Arginine methyltransferase oligomerization subdomain (From Topology) | H: Arginine methyltransferase oligomerization subdomain (From Topology) | T: Arginine methyltransferase oligomerization subdomain | F: PRMT5_C | ECOD (1.6) |
C | PRMT5_TIM | e7m05C2 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PRMT5_TIM | ECOD (1.6) |
C | PRMT5 | e7m05C1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PRMT5 | ECOD (1.6) |
G | PRMT5_C | e7m05G1 | A: beta sandwiches | X: Arginine methyltransferase oligomerization subdomain (From Topology) | H: Arginine methyltransferase oligomerization subdomain (From Topology) | T: Arginine methyltransferase oligomerization subdomain | F: PRMT5_C | ECOD (1.6) |
G | PRMT5_TIM | e7m05G3 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: PRMT5_TIM | ECOD (1.6) |
G | PRMT5 | e7m05G2 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: PRMT5 | ECOD (1.6) |
B | ANAPC4_WD40_5 | e7m05B1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_5 | ECOD (1.6) |
F | ANAPC4_WD40_5 | e7m05F1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_5 | ECOD (1.6) |
D | ANAPC4_WD40_5 | e7m05D1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_5 | ECOD (1.6) |
H | ANAPC4_WD40_5 | e7m05H1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: ANAPC4_WD40_5 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF17285 | PRMT5 TIM barrel domain (PRMT5_TIM) | PRMT5 TIM barrel domain | This domain corresponds to the N-terminal TIM barrel domain from PRMT5 proteins.. | Domain | |
PF05185 | PRMT5 arginine-N-methyltransferase (PRMT5) | PRMT5 arginine-N-methyltransferase | The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase [3][4]. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes. | Domain | |
PF17286 | PRMT5 oligomerisation domain (PRMT5_C) | PRMT5 oligomerisation domain | - | Domain | |
PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR035247 | PRMT5, TIM barrel domain | Domain | |
IPR025799 | Protein arginine N-methyltransferase | Family | |
IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily | Homologous Superfamily | |
IPR007857 | Protein arginine N-methyltransferase PRMT5 | Family | |
IPR035248 | PRMT5, oligomerisation domain | Domain | |
IPR035075 | PRMT5 arginine-N-methyltransferase | Domain | |
IPR019775 | WD40 repeat, conserved site | Conserved Site | |
IPR015943 | WD40/YVTN repeat-like-containing domain superfamily | Homologous Superfamily | |
IPR036322 | WD40-repeat-containing domain superfamily | Homologous Superfamily | |
IPR052139 | Methylosome Component WDR77 | Family | |
IPR001680 | WD40 repeat | Repeat |