Crystallographic structure of a cubic crystal form of STMV grown from ammonium sulfate
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| O | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| FA [auth KK] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| EA [auth JJ] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| DA [auth II] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| CA [auth HH] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| BA [auth GG] | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Satellite viruses | 8040781 | 3000942 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| O | e7m50O1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| N | e7m50N1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| M | e7m50M1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| L | e7m50L1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| K | e7m50K1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| J | e7m50J1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| I | e7m50I1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| H | e7m50H1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| G | e7m50G1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| FA [auth KK] | e7m50KK1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| F | e7m50F1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| EA [auth JJ] | e7m50JJ1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| E | e7m50E1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| DA [auth II] | e7m50II1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| D | e7m50D1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| CA [auth HH] | e7m50HH1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| C | e7m50C1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| BA [auth GG] | e7m50GG1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| B | e7m50B1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) | |
| A | e7m50A1 | A: Family A G protein-coupled receptor-like | X: Family A G protein-coupled receptor-like | H: Family A G protein-coupled receptor-like | T: Secretin_N | F: | ECOD (20:10:01) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| AA [auth n], KA [auth kk], Z [auth m] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| LA [auth ll], MA [auth qq], Y [auth i] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| X [auth h] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| IA [auth WW], W [auth e] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U))-3') | - | - | - |
| U [auth Y], V [auth a] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| HA [auth UU], JA [auth bb], T [auth X] | RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3') | - | - | - |
| Q [auth S], R [auth T] | RNA (5'-R(P*AP*AP*AP*AP*AP*A)-3') | - | - | - |
| GA [auth TT], P, S [auth V] | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*A)-3') | - | - | - |
| Coat protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR037164 | Satellite virus coat domain superfamily | Homologous Superfamily |
