Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth F]SCOP2B SuperfamilyRibosomal protein L4 8080706 3001146 SCOP2B (2022-06-29)
E [auth K]SCOP2B SuperfamilyRibosomal protein L13 8100460 3001134 SCOP2B (2022-06-29)
F [auth L]SCOP2B Superfamily50S Ribosomal protein L14-like 8072072 3000433 SCOP2B (2022-06-29)
I [auth O]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8033689 3000995 SCOP2B (2022-06-29)
W [auth 9]SCOP2B SuperfamilyMitochondrial ribosomal protein L27-like 8053893 3002240 SCOP2B (2022-06-29)
KA [auth u]SCOP2B SuperfamilyNucleotidyltransferase-like 8100396 3000129 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth D]Ribosomal_L2e7oi6D2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2ECOD (1.6)
A [auth D]Ribosomal_L2_Ce7oi6D1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
B [auth E]Ribosomal_L3e7oi6E1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
C [auth F]Ribosomal_L4e7oi6F1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
D [auth H]Ribosomal_L9_N_1e7oi6H1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_N_1ECOD (1.6)
E [auth K]Ribosomal_L13e7oi6K1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
F [auth L]Ribosomal_L14e7oi6L1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
G [auth M]Ribosomal_L27Ae7oi6M1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
H [auth N]Ribosomal_L16e7oi6N1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
I [auth O]Ribosomal_L17e7oi6O1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17ECOD (1.6)
J [auth Q]Ribosomal_L19e7oi6Q1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
K [auth R]Ribosomal_L20e7oi6R1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
L [auth S]Ribosomal_L21pe7oi6S1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
M [auth T]Ribosomal_L22e7oi6T1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
N [auth U]Ribosomal_L23_2e7oi6U1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
O [auth V]ribosomal_L24_1e7oi6V1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
P [auth X]Ribosomal_L28_1e7oi6X1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Mitoribosomal protein bL28mF: Ribosomal_L28_1ECOD (1.6)
Q [auth Y]MRP-L47e7oi6Y1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: MRP-L47ECOD (1.6)
R [auth Z]Ribosomal_L30e7oi6Z1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
S [auth 0]KOG4080e7oi601 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: KOG4080ECOD (1.6)
T [auth 2]Ribosomal_L34e7oi621 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
U [auth 5]PDCD9e7oi651 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
V [auth 7]TGSe7oi671 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: TGSECOD (1.6)
V [auth 7]tRNA_SADe7oi672 A: a+b two layersX: LuxS, MPP, ThrRS/AlaRS common domainH: LuxS, MPP, ThrRS/AlaRS common domainT: ThrRS/AlaRS editing domainF: tRNA_SADECOD (1.6)
W [auth 9]MRP-L27e7oi691 A: extended segmentsX: Mitochondrial 54S ribosomal protein L27 (From Topology)H: Mitochondrial 54S ribosomal protein L27 (From Topology)T: Mitochondrial 54S ribosomal protein L27F: MRP-L27ECOD (1.6)
X [auth a]MRP-S32e7oi6a1 A: extended segmentsX: Mitoribosomal protein mL42 (From Topology)H: Mitoribosomal protein mL42 (From Topology)T: Mitoribosomal protein mL42F: MRP-S32ECOD (1.6)
Y [auth b]L51_S25_CI-B8e7oi6b1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
Z [auth c]Ribonucleas_3_3e7oi6c1 A: alpha arraysX: RNase III catalytic domain-like (From Topology)H: RNase III catalytic domain-like (From Topology)T: RNase III catalytic domain-likeF: Ribonucleas_3_3ECOD (1.6)
Z [auth c]dsrme7oi6c2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: dsrmECOD (1.6)
AA [auth d]Tim44e7oi6d1 A: a+b two layersX: Cystatin-likeH: NTF2-like (From Topology)T: NTF2-likeF: Tim44ECOD (1.6)
BA [auth g]Img2e7oi6g1 A: a+b two layersX: Glucose permease domain IIB-likeH: eIF1-like (From Topology)T: eIF1-likeF: Img2ECOD (1.6)
CA [auth h]Ribosomal_L50e7oi6h1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: Ribosomal_L50ECOD (1.6)
DA [auth i]MRP-L51e7oi6i1 A: alpha bundlesX: Long alpha-hairpinH: Mitoribosomal protein mL51 (From Topology)T: Mitoribosomal protein mL51F: MRP-L51ECOD (1.6)
EA [auth j]EUF08791e7oi6j1 A: extended segmentsX: Mitoribosomal protein mL52 (From Topology)H: Mitoribosomal protein mL52 (From Topology)T: Mitoribosomal protein mL52F: EUF08791ECOD (1.6)
FA [auth o]MRP-63e7oi6o1 A: extended segmentsX: Mitoribosomal protein mL63 (From Topology)H: Mitoribosomal protein mL63 (From Topology)T: Mitoribosomal protein mL63F: MRP-63ECOD (1.6)
GA [auth p]RF-1_Ne7oi6p1 A: a+b two layersX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-like (From Topology)T: Peptidyl-tRNA hydrolase domain-likeF: RF-1_NECOD (1.6)
HA [auth q]CR6_interacte7oi6q1 A: extended segmentsX: Mitochondrial 54S ribosomal protein L25 (From Topology)H: Mitochondrial 54S ribosomal protein L25 (From Topology)T: Mitochondrial 54S ribosomal protein L25F: CR6_interactECOD (1.6)
IA [auth r]Ribosomal_S18e7oi6r1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
JA [auth s]PDCD9e7oi6s1 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: PDCD9ECOD (1.6)
KA [auth u]RsfSe7oi6u1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: RsfSECOD (1.6)
LA [auth v]Complex1_LYRe7oi6v1 A: alpha bundlesX: LYR protein (From Topology)H: LYR protein (From Topology)T: LYR proteinF: Complex1_LYRECOD (1.6)
MA [auth w]PP-bindinge7oi6w1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: PP-bindingECOD (1.6)
OA [auth x]DEADe7oi6x1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DEADECOD (1.6)
OA [auth x]Helicase_Ce7oi6x2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Helicase_CECOD (1.6)
PA [auth y]GTP1_OBGe7oi6y1 A: beta complex topologyX: Obg GTP-binding protein N-terminal domain (From Topology)H: Obg GTP-binding protein N-terminal domain (From Topology)T: Obg GTP-binding protein N-terminal domainF: GTP1_OBGECOD (1.6)
PA [auth y]MnmE_helical_2nde7oi6y2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
QA [auth z]SpoU_sub_bind_1e7oi6z2 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: SpoU_sub_bind_1ECOD (1.6)
QA [auth z]SpoU_methylasee7oi6z1 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: SpoU_methylaseECOD (1.6)
ZA [auth 1]SpoU_sub_bind_1e7oi612 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: SpoU_sub_bind_1ECOD (1.6)
ZA [auth 1]SpoU_methylasee7oi611 A: a/b three-layered sandwichesX: alpha/beta knot (From Topology)H: alpha/beta knot (From Topology)T: alpha/beta knotF: SpoU_methylaseECOD (1.6)
SA [auth P]Ribosomal_L18pe7oi6P1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
TA [auth W]Ribosomal_L27e7oi6W1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
UA [auth 6]PBPe7oi661 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: PEBP-likeF: PBPECOD (1.6)
VA [auth I]Ribosomal_L10e7oi6I1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
WA [auth J]Ribosomal_L11e7oi6J1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
WA [auth J]Ribosomal_L11_Ne7oi6J2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
XA [auth k]MRP_L53e7oi6k1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: MRP_L53ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth D]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
A [auth D]PF04280Tim44-like domain (Tim44)Tim44-like domainTim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostati ...Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane [1]. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [1]. This family includes the C-terminal region of Tim44 that has been shown to form a stable proteolytic fragment in yeast. This region is also found in a set of smaller bacterial proteins. The molecular function of the bacterial members of this family is unknown but transport seems likely. The crystal structure of the C terminal of Tim44 has revealed a large hydrophobic pocket which might play an important role in interacting with the acyl chains of lipid molecules in the mitochondrial membrane [3].
Domain
A [auth D]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
B [auth E]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
C [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
D [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
D [auth H]PF10501Ribosomal subunit 39S (Ribosomal_L50)Ribosomal subunit 39SThe 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absenc ...The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units [1]. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [2]. In E. coli, in the absence of the enzyme pseudouridine synthase (RluD) synthase, there is an accumulation of 50S and 30S subunits and the appearance of abnormal particles (62S and 39S), with concomitant loss of 70S ribosomes [2].
Domain
E [auth K]PF1078039S ribosomal protein L53/MRP-L53 (MRP_L53)39S ribosomal protein L53/MRP-L53- Family
E [auth K]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
F [auth L]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
G [auth M]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
H [auth N]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
I [auth O]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
J [auth Q]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
K [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
K [auth R]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
L [auth S]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
M [auth T]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
N [auth U]PF02410Ribosomal silencing factor during starvation (RsfS)Ribosomal silencing factor during starvation- Family
N [auth U]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
O [auth V]PF05347Complex 1 protein (LYR family) (Complex1_LYR)Complex 1 protein (LYR family)- Family
O [auth V]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
O [auth V]PF00467KOW motif (KOW)KOW motif- Family
P [auth X]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
P [auth X]PF00830Ribosomal L28 family (Ribosomal_L28)Ribosomal L28 family- Family
Q [auth Y]PF01018GTP1/OBG (GTP1_OBG)GTP1/OBGThe N-terminal domain of Swiss:P20964 has the OBG fold, which is formed by three glycine-rich regions inserted into a small 8-stranded beta-sandwich these regions form six left-handed collagen-like helices packed and H-bonded together.Domain
Q [auth Y]PF0192650S ribosome-binding GTPase (MMR_HSR1)50S ribosome-binding GTPase- Family
Q [auth Y]PF06984Mitochondrial 39-S ribosomal protein L47 (MRP-L47) (MRP-L47)Mitochondrial 39-S ribosomal protein L47 (MRP-L47)- Family
R [auth Z]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
R [auth Z]PF22435MRM3-like substrate binding domain (MRM3-like_sub_bind)MRM3-like substrate binding domainMRM3 catalyses the formation of 2'-O-methylguanosine at position 1370 Gm1370) in the 16S mitochondrial large subunit ribosomal RNA (mtLSU rRNA), a conserved modification in the peptidyl transferase domain of the mtLSU rRNA [1-3]. This entry represent ...MRM3 catalyses the formation of 2'-O-methylguanosine at position 1370 Gm1370) in the 16S mitochondrial large subunit ribosomal RNA (mtLSU rRNA), a conserved modification in the peptidyl transferase domain of the mtLSU rRNA [1-3]. This entry represents the substrate binding domain of MRM3 from animals and related sequences from bacteria.
Domain
S [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
U [auth 5]PF07147Mitochondrial 28S ribosomal protein S30 (PDCD9) (PDCD9)Mitochondrial 28S ribosomal protein S30 (PDCD9)- Family
NA [auth A]PF10210Mitochondrial 28S ribosomal protein S32 (MRP-S32)Mitochondrial 28S ribosomal protein S32- Family
QA [auth z],
ZA [auth 1]
PF22435MRM3-like substrate binding domain (MRM3-like_sub_bind)MRM3-like substrate binding domainMRM3 catalyses the formation of 2'-O-methylguanosine at position 1370 Gm1370) in the 16S mitochondrial large subunit ribosomal RNA (mtLSU rRNA), a conserved modification in the peptidyl transferase domain of the mtLSU rRNA [1-3]. This entry represent ...MRM3 catalyses the formation of 2'-O-methylguanosine at position 1370 Gm1370) in the 16S mitochondrial large subunit ribosomal RNA (mtLSU rRNA), a conserved modification in the peptidyl transferase domain of the mtLSU rRNA [1-3]. This entry represents the substrate binding domain of MRM3 from animals and related sequences from bacteria.
Domain
QA [auth z],
ZA [auth 1]
PF00588SpoU rRNA Methylase family (SpoU_methylase)SpoU rRNA Methylase family- Family
SA [auth P]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
TA [auth W]PF00550Phosphopantetheine attachment site (PP-binding)Phosphopantetheine attachment siteA 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes memb ...A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of Swiss:P19828 has the attachment serine replaced by an alanine.
Domain
UA [auth 6]PF01161Phosphatidylethanolamine-binding protein (PBP)Phosphatidylethanolamine-binding protein- Domain
VA [auth I]PF10244Mitochondrial ribosomal subunit (MRP-L51)Mitochondrial ribosomal subunit- Family
VA [auth I]PF00466Ribosomal protein L10 (Ribosomal_L10)Ribosomal protein L10- Family
WA [auth J]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
WA [auth J]PF18699Mitoribosomal protein mL52 (MRPL52)Mitoribosomal protein mL52- Family
WA [auth J]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D]39S ribosomal protein L2, mitochondrial
B [auth E]39S ribosomal protein L3, mitochondrial
C [auth F]39S ribosomal protein L4, mitochondrial
D [auth H]39S ribosomal protein L9, mitochondrial
E [auth K]39S ribosomal protein L13, mitochondrial
F [auth L]39S ribosomal protein L14, mitochondrial
G [auth M]39S ribosomal protein L15, mitochondrial
H [auth N]39S ribosomal protein L16, mitochondrial
I [auth O]39S ribosomal protein L17, mitochondrial
J [auth Q]39S ribosomal protein L19, mitochondrial
K [auth R]39S ribosomal protein L20, mitochondrial
L [auth S]39S ribosomal protein L21, mitochondrial
M [auth T]39S ribosomal protein L22, mitochondrial
N [auth U]39S ribosomal protein L23, mitochondrial
O [auth V]39S ribosomal protein L24, mitochondrial
P [auth X]39S ribosomal protein L28, mitochondrial
Q [auth Y]39S ribosomal protein L47, mitochondrial
R [auth Z]39S ribosomal protein L30, mitochondrial
S [auth 0]39S ribosomal protein L32, mitochondrial
T [auth 2]39S ribosomal protein L34, mitochondrial
U [auth 5]39S ribosomal protein L37, mitochondrial
V [auth 7]39S ribosomal protein L39, mitochondrial
W [auth 9]39S ribosomal protein L41, mitochondrial
X [auth a]39S ribosomal protein L42, mitochondrial
Y [auth b]39S ribosomal protein L43, mitochondrial
Z [auth c]39S ribosomal protein L44, mitochondrial
AA [auth d]39S ribosomal protein L45, mitochondrial
BA [auth g]39S ribosomal protein L49, mitochondrial
CA [auth h]39S ribosomal protein L50, mitochondrial-
DA [auth i]39S ribosomal protein L51, mitochondrial
EA [auth j]39S ribosomal protein L52, mitochondrial
FA [auth o]Ribosomal protein 63, mitochondrial
GA [auth p]Peptidyl-tRNA hydrolase ICT1, mitochondrial
HA [auth q]Growth arrest and DNA damage-inducible proteins-interacting protein 1-
IA [auth r]39S ribosomal protein S18a, mitochondrial
JA [auth s]39S ribosomal protein S30, mitochondrial
KA [auth u]Mitochondrial assembly of ribosomal large subunit protein 1
LA [auth v]MIEF1 upstream open reading frame protein
MA [auth w]Acyl carrier protein, mitochondrial
NA [auth A]16S rRNA---
OA [auth x]Probable ATP-dependent RNA helicase DDX28
PA [auth y]GTP-binding protein 10
QA [auth z],
ZA [auth 1]
rRNA methyltransferase 3, mitochondrial
RA [auth B]mitochondrial Val tRNA---
SA [auth P]39S ribosomal protein L18, mitochondrial
TA [auth W]39S ribosomal protein L27, mitochondrial
UA [auth 6]39S ribosomal protein L38, mitochondrial-
VA [auth I]39S ribosomal protein L10, mitochondrial
WA [auth J]39S ribosomal protein L11, mitochondrial
XA [auth k]39S ribosomal protein L53, mitochondrial-
YA [auth l]39S ribosomal protein L54, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth D]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
A [auth D]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
A [auth D]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
A [auth D]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
A [auth D]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
A [auth D]IPR002171Large ribosomal subunit protein uL2Family
B [auth E]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
B [auth E]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
B [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
B [auth E]IPR000597Large ribosomal subunit protein uL3Family
C [auth F]IPR013005Large ribosomal subunit protein uL4-likeFamily
C [auth F]IPR002136Large ribosomal subunit protein uL4Family
C [auth F]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
D [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
D [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
D [auth H]IPR054302Large ribosomal subunit protein bL9m, C-terminal domainDomain
D [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
D [auth H]IPR000244Large ribosomal subunit protein bL9Family
E [auth K]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
E [auth K]IPR005822Large ribosomal subunit protein uL13Family
E [auth K]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
E [auth K]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
F [auth L]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
F [auth L]IPR000218Large ribosomal subunit protein uL14Family
G [auth M]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
G [auth M]IPR021131Large ribosomal subunit protein uL15/eL18Domain
G [auth M]IPR030878Large ribosomal subunit protein uL15Family
G [auth M]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
H [auth N]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
H [auth N]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
H [auth N]IPR016180Large ribosomal subunit protein uL16 domainDomain
H [auth N]IPR047873Large ribosomal subunit protein uL16Family
I [auth O]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
I [auth O]IPR000456Large ribosomal subunit protein bL17Family
J [auth Q]IPR001857Large ribosomal subunit protein bL19Family
J [auth Q]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
J [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
K [auth R]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
K [auth R]IPR005813Large ribosomal subunit protein bL20Family
L [auth S]IPR028909Large ribosomal subunit protein bL21-likeFamily
L [auth S]IPR001787Large ribosomal subunit protein bL21Family
L [auth S]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
M [auth T]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
M [auth T]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
M [auth T]IPR001063Large ribosomal subunit protein uL22Family
N [auth U]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
N [auth U]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
N [auth U]IPR013025Large ribosomal subunit protein uL23-likeFamily
O [auth V]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
O [auth V]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
O [auth V]IPR003256Large ribosomal subunit protein uL24Family
O [auth V]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
O [auth V]IPR005824KOWDomain
O [auth V]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
P [auth X]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
P [auth X]IPR026569Large ribosomal subunit protein bL28Family
P [auth X]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
Q [auth Y]IPR038340MRP-L47 superfamily, mitochondrialHomologous Superfamily
Q [auth Y]IPR010729Large ribosomal subunit protein uL29m, mitochondrialFamily
R [auth Z]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
R [auth Z]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
R [auth Z]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
S [auth 0]IPR002677Large ribosomal subunit protein bL32Family
S [auth 0]IPR051991Mitochondrial ribosomal protein bL32Family
S [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
T [auth 2]IPR000271Large ribosomal subunit protein bL34Family
U [auth 5]IPR052482Mitochondrial large ribosomal subunit mL37Family
U [auth 5]IPR010793Large ribosomal subunit protein mL37/mL65Family
V [auth 7]IPR012676TGS-likeHomologous Superfamily
V [auth 7]IPR018163Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamilyHomologous Superfamily
V [auth 7]IPR050062Proline-tRNA synthetaseFamily
V [auth 7]IPR004095TGSDomain
V [auth 7]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
W [auth 9]IPR019189Large ribosomal subunit protein mL41Family
X [auth a]IPR019346Large ribosomal subunit protein mL42Family
Y [auth b]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
Y [auth b]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
Y [auth b]IPR039927Large ribosomal subunit protein mL43Family
Z [auth c]IPR036389Ribonuclease III, endonuclease domain superfamilyHomologous Superfamily
Z [auth c]IPR044444Large ribosomal subunit protein mL44, dsRNA binding domain, metazoaDomain
Z [auth c]IPR014720Double-stranded RNA-binding domainDomain
AA [auth d]IPR032710NTF2-like domain superfamilyHomologous Superfamily
AA [auth d]IPR007379Tim44-like domainDomain
AA [auth d]IPR051975Mitochondrial Large Ribosomal Subunit mL45Family
BA [auth g]IPR007740Large ribosomal subunit protein mL49Family
CA [auth h]IPR018305Large ribosomal subunit protein mL50Family
DA [auth i]IPR019373Large ribosomal subunit protein mL51Family
EA [auth j]IPR034596Large ribosomal subunit protein mL52Family
FA [auth o]IPR016576Large ribosomal subunit protein mL63Family
GA [auth p]IPR052104Mitochondrial Release Factor mL62Family
GA [auth p]IPR000352Peptide chain release factor class IDomain
HA [auth q]IPR018472Large ribosomal subunit protein mL64Family
HA [auth q]IPR043035Large ribosomal subunit protein mL64 domain superfamilyHomologous Superfamily
IA [auth r]IPR001648Small ribosomal subunit protein bS18Family
IA [auth r]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
JA [auth s]IPR039982Large ribosomal subunit protein mL65Family
JA [auth s]IPR010793Large ribosomal subunit protein mL37/mL65Family
KA [auth u]IPR043519Nucleotidyltransferase superfamilyHomologous Superfamily
KA [auth u]IPR004394Protein Iojap/ribosomal silencing factor RsfSFamily
LA [auth v]IPR008011Complex 1 LYR protein domainDomain
LA [auth v]IPR045300MIEF1-MP, LYR domainDomain
MA [auth w]IPR006162Phosphopantetheine attachment sitePTM
MA [auth w]IPR036736ACP-like superfamilyHomologous Superfamily
MA [auth w]IPR009081Phosphopantetheine binding ACP domainDomain
MA [auth w]IPR003231Acyl carrier proteinFamily
OA [auth x]IPR001650Helicase, C-terminal domain-likeDomain
OA [auth x]IPR050079DEAD box RNA helicaseFamily
OA [auth x]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
OA [auth x]IPR014014RNA helicase, DEAD-box type, Q motifDomain
OA [auth x]IPR011545DEAD/DEAH box helicase domainDomain
OA [auth x]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
PA [auth y]IPR031167OBG-type guanine nucleotide-binding (G) domainDomain
PA [auth y]IPR045086OBG-type GTPaseFamily
PA [auth y]IPR036726GTP1/OBG domain superfamilyHomologous Superfamily
PA [auth y]IPR014100GTP-binding protein Obg/CgtAFamily
PA [auth y]IPR006169GTP1/OBG domainDomain
PA [auth y]IPR006073GTP binding domainDomain
PA [auth y]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
QA [auth z],
ZA [auth 1]
IPR001537tRNA/rRNA methyltransferase, SpoU typeDomain
QA [auth z],
ZA [auth 1]
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalHomologous Superfamily
QA [auth z],
ZA [auth 1]
IPR051259Ribosomal RNA MethyltransferaseFamily
QA [auth z],
ZA [auth 1]
IPR053888MRM3-like, substrate binding domainDomain
QA [auth z],
ZA [auth 1]
IPR029028Alpha/beta knot methyltransferasesHomologous Superfamily
QA [auth z],
ZA [auth 1]
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
QA [auth z],
ZA [auth 1]
IPR013123RNA 2-O ribose methyltransferase, substrate bindingDomain
SA [auth P]IPR005484Large ribosomal subunit protein uL18Family
SA [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
TA [auth W]IPR001684Large ribosomal subunit protein bL27Family
UA [auth 6]IPR036610PEBP-like superfamilyHomologous Superfamily
UA [auth 6]IPR008914Phosphatidylethanolamine-binding proteinFamily
UA [auth 6]IPR035810Phosphatidylethanolamine-binding protein, eukaryoticFamily
VA [auth I]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
VA [auth I]IPR001790Large ribosomal subunit protein uL10Family
VA [auth I]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
WA [auth J]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
WA [auth J]IPR000911Ribosomal protein uL11Family
WA [auth J]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
WA [auth J]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
WA [auth J]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
WA [auth J]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
XA [auth k]IPR019716Large ribosomal subunit protein mL53Family
XA [auth k]IPR052473Mitochondrial Large Ribosomal Subunit mL53Family
YA [auth l]IPR013870Large ribosomal subunit protein mL54Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth D]PharosQ5T653
B [auth E]PharosP09001
C [auth F]PharosQ9BYD3
D [auth H]PharosQ9BYD2
E [auth K]PharosQ9BYD1
F [auth L]PharosQ6P1L8
G [auth M]PharosQ9P015
H [auth N]PharosQ9NX20
I [auth O]PharosQ9NRX2
J [auth Q]PharosP49406
K [auth R]PharosQ9BYC9
M [auth T]PharosQ9NWU5
N [auth U]PharosQ16540
O [auth V]PharosQ96A35
P [auth X]PharosQ13084
Q [auth Y]PharosQ9HD33
R [auth Z]PharosQ8TCC3
S [auth 0]PharosQ9BYC8
T [auth 2]PharosQ9BQ48
U [auth 5]PharosQ9BZE1
V [auth 7]PharosQ9NYK5
W [auth 9]PharosQ8IXM3
X [auth a]PharosQ9Y6G3
Y [auth b]PharosQ8N983
Z [auth c]PharosQ9H9J2
AA [auth d]PharosQ9BRJ2
BA [auth g]PharosQ13405
CA [auth h]PharosQ8N5N7
DA [auth i]PharosQ4U2R6
EA [auth j]PharosQ86TS9
FA [auth o]PharosQ9BQC6
GA [auth p]PharosQ14197
HA [auth q]PharosQ8TAE8
IA [auth r]PharosQ9NVS2
JA [auth s]PharosQ9NP92
KA [auth u]PharosQ96EH3
LA [auth v]PharosL0R8F8
MA [auth w]PharosO14561
OA [auth x]PharosQ9NUL7
PA [auth y]PharosA4D1E9
QA [auth z],
ZA [auth 1]
PharosQ9HC36
SA [auth P]PharosQ9H0U6
TA [auth W]PharosQ9P0M9
VA [auth I]PharosQ7Z7H8
WA [auth J]PharosQ9Y3B7
YA [auth l]PharosQ6P161