7OOD

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth c]SCOP2B SuperfamilyRibosomal protein L4 8107624 3001146 SCOP2B (2022-06-29)
G [auth k]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8107650 3001045 SCOP2B (2022-06-29)
H [auth i]SCOP2B SuperfamilyRibosomal protein L13 8107608 3001134 SCOP2B (2022-06-29)
I [auth m]SCOP2B SuperfamilyProkaryotic ribosomal protein L17 8107666 3000995 SCOP2B (2022-06-29)
J [auth q]SCOP2B Superfamilyl21p-like 8107634 3002005 SCOP2B (2022-06-29)
K [auth u]SCOP2B SuperfamilyRibosomal L27 protein-like 8107616 3000539 SCOP2B (2022-06-29)
L [auth y]SCOP2B SuperfamilyZn-binding ribosomal proteins 8107612 3001320 SCOP2B (2022-06-29)
N [auth 2]SCOP2B SuperfamilyRibosomal protein L36 8107602 3001346 SCOP2B (2022-06-29)
O [auth 1]SCOP2 FamilyRibosomal protein L35p 8107613 4003406 SCOP2 (2022-06-29)
O [auth 1]SCOP2 SuperfamilyL35p-like 8107614 3000790 SCOP2 (2022-06-29)
P [auth o]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8107604 3000334 SCOP2B (2022-06-29)
T [auth z]SCOP2B SuperfamilyZn-binding ribosomal proteins 8107630 3001320 SCOP2B (2022-06-29)
U [auth d]SCOP2B SuperfamilyRL5-like 8107658 3001709 SCOP2B (2022-06-29)
V [auth b]SCOP2B SuperfamilyTranslational proteins 8107626 3000811 SCOP2B (2022-06-29)
W [auth l]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8107596 3000884 SCOP2B (2022-06-29)
X [auth p]SCOP2B SuperfamilyRibosomal protein L20 8107632 3000563 SCOP2B (2022-06-29)
Y [auth j]SCOP2B Superfamily50S Ribosomal protein L14-like 8107662 3000433 SCOP2B (2022-06-29)
Z [auth n]SCOP2B SuperfamilyTranslational machinery components 8107652 3000571 SCOP2B (2022-06-29)
AA [auth t]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8107660 3000334 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth a]Ribosomal_L2_1e7ooda2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
D [auth a]Ribosomal_L2_Ce7ooda1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
E [auth c]Ribosomal_L4e7oodc1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
F [auth e]Ribosomal_L6e7oode1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
F [auth e]Ribosomal_L6_1e7oode2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
G [auth k]Ribosomal_L27Ae7oodk1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
H [auth i]Ribosomal_L13e7oodi1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
I [auth m]Ribosomal_L17_1e7oodm1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
J [auth q]Ribosomal_L21pe7oodq1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
K [auth u]Ribosomal_L27e7oodu1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
L [auth y]Ribosomal_L32pe7oody1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
M [auth 0]Ribosomal_L34e7ood01 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
N [auth 2]Ribosomal_L36e7ood21 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
O [auth 1]Ribosomal_L35pe7ood11 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
P [auth o]Ribosomal_L19e7oodo1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
Q [auth s]Ribosomal_L23_2e7oods1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
R [auth v]Ribosomal_L28e7oodv1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
S [auth x]Ribosomal_L31e7oodx1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
T [auth z]Ribosomal_L33e7oodz1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
U [auth d]Ribosomal_L5_Ce7oodd1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
V [auth b]Ribosomal_L3e7oodb1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
W [auth l]Ribosomal_L16e7oodl1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
X [auth p]Ribosomal_L20e7oodp1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
Y [auth j]Ribosomal_L14e7oodj1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
Z [auth n]Ribosomal_L18pe7oodn1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
AA [auth t]ribosomal_L24_1e7oodt1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
CA [auth f]Ribosomal_L9_Ne7oodf1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
CA [auth f]Ribosomal_L9_Ce7oodf2 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_CECOD (1.6)
DA [auth h]Ribosomal_L11e7oodh1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
DA [auth h]Ribosomal_L11_Ne7oodh2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
EA [auth g]Ribosomal_L10e7oodg1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
M [auth 0]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
N [auth 2]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
O [auth 1]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth w]50S ribosomal protein L29
D [auth a]50S ribosomal protein L2
E [auth c]50S ribosomal protein L4
F [auth e]50S ribosomal protein L6
G [auth k]50S ribosomal protein L15
H [auth i]50S ribosomal protein L13
I [auth m]50S ribosomal protein L17
J [auth q]50S ribosomal protein L21
K [auth u]50S ribosomal protein L27
L [auth y]50S ribosomal protein L32
M [auth 0]50S ribosomal protein L34
N [auth 2]50S ribosomal protein L36
O [auth 1]50S ribosomal protein L35
P [auth o]50S ribosomal protein L19
Q [auth s]50S ribosomal protein L23
R [auth v]50S ribosomal protein L28
S [auth x]50S ribosomal protein L31
T [auth z]50S ribosomal protein L33 1
U [auth d]50S ribosomal protein L5
V [auth b]50S ribosomal protein L3
W [auth l]50S ribosomal protein L16
X [auth p]50S ribosomal protein L20
Y [auth j]50S ribosomal protein L14
Z [auth n]50S ribosomal protein L18
AA [auth t]50S ribosomal protein L24
BA [auth r]50S ribosomal protein L22
CA [auth f]50S ribosomal protein L9
DA [auth h]50S ribosomal protein L11
EA [auth g]50S ribosomal protein L10
A [auth 3]23S ribosomal RNA---
B [auth 4]5S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth w]IPR050063Universal ribosomal protein uL29Family
C [auth w]IPR001854Large ribosomal subunit protein uL29Family
C [auth w]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
C [auth w]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
D [auth a]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
D [auth a]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth a]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth a]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
D [auth a]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
D [auth a]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth a]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
D [auth a]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
D [auth a]IPR002171Large ribosomal subunit protein uL2Family
E [auth c]IPR013005Large ribosomal subunit protein uL4-likeFamily
E [auth c]IPR002136Large ribosomal subunit protein uL4Family
E [auth c]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
F [auth e]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
F [auth e]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
F [auth e]IPR000702Large ribosomal subunit protein uL6-likeFamily
F [auth e]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
F [auth e]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
G [auth k]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
G [auth k]IPR021131Large ribosomal subunit protein uL15/eL18Domain
G [auth k]IPR030878Large ribosomal subunit protein uL15Family
G [auth k]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
H [auth i]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
H [auth i]IPR005822Large ribosomal subunit protein uL13Family
H [auth i]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
H [auth i]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
I [auth m]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
I [auth m]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
I [auth m]IPR000456Large ribosomal subunit protein bL17Family
J [auth q]IPR028909Large ribosomal subunit protein bL21-likeFamily
J [auth q]IPR001787Large ribosomal subunit protein bL21Family
J [auth q]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
J [auth q]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
K [auth u]IPR001684Large ribosomal subunit protein bL27Family
K [auth u]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
L [auth y]IPR002677Large ribosomal subunit protein bL32Family
L [auth y]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
L [auth y]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
M [auth 0]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
M [auth 0]IPR000271Large ribosomal subunit protein bL34Family
N [auth 2]IPR000473Large ribosomal subunit protein bL36Family
N [auth 2]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
O [auth 1]IPR021137Large ribosomal subunit protein bL35-likeFamily
O [auth 1]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
O [auth 1]IPR001706Large ribosomal subunit protein bL35Family
O [auth 1]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
P [auth o]IPR001857Large ribosomal subunit protein bL19Family
P [auth o]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
P [auth o]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
P [auth o]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth s]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Q [auth s]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Q [auth s]IPR013025Large ribosomal subunit protein uL23-likeFamily
R [auth v]IPR001383Large ribosomal subunit protein bL28, bacterial-typeFamily
R [auth v]IPR037147Large ribosomal subunit protein bL28 superfamilyHomologous Superfamily
R [auth v]IPR050096Bacterial ribosomal protein bL28Family
R [auth v]IPR026569Large ribosomal subunit protein bL28Family
R [auth v]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
S [auth x]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
S [auth x]IPR027491Large ribosomal subunit protein bL31 type AFamily
S [auth x]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
S [auth x]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
T [auth z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
T [auth z]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
T [auth z]IPR001705Large ribosomal subunit protein bL33Family
T [auth z]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
U [auth d]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
U [auth d]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
U [auth d]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
U [auth d]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
U [auth d]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
U [auth d]IPR002132Large ribosomal subunit protein uL5Family
V [auth b]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
V [auth b]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
V [auth b]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
V [auth b]IPR000597Large ribosomal subunit protein uL3Family
W [auth l]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
W [auth l]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
W [auth l]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
W [auth l]IPR016180Large ribosomal subunit protein uL16 domainDomain
W [auth l]IPR047873Large ribosomal subunit protein uL16Family
X [auth p]IPR049946Large ribosomal subunit protein bL20, conserved siteConserved Site
X [auth p]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
X [auth p]IPR005813Large ribosomal subunit protein bL20Family
Y [auth j]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
Y [auth j]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Y [auth j]IPR000218Large ribosomal subunit protein uL14Family
Y [auth j]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
Z [auth n]IPR005484Large ribosomal subunit protein uL18Family
Z [auth n]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
AA [auth t]IPR003256Large ribosomal subunit protein uL24Family
AA [auth t]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
AA [auth t]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth t]IPR005824KOWDomain
AA [auth t]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth t]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
BA [auth r]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
BA [auth r]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
BA [auth r]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
BA [auth r]IPR001063Large ribosomal subunit protein uL22Family
BA [auth r]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
CA [auth f]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
CA [auth f]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
CA [auth f]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
CA [auth f]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
CA [auth f]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
CA [auth f]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
CA [auth f]IPR000244Large ribosomal subunit protein bL9Family
DA [auth h]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
DA [auth h]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
DA [auth h]IPR000911Ribosomal protein uL11Family
DA [auth h]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
DA [auth h]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
DA [auth h]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
DA [auth h]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
EA [auth g]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
EA [auth g]IPR001790Large ribosomal subunit protein uL10Family
EA [auth g]IPR047865Large ribosomal subunit protein uL10, bacterial typeFamily
EA [auth g]IPR022973Large ribosomal subunit protein uL10, bacterialFamily
EA [auth g]IPR002363Large ribosomal subunit protein uL10, conserved site, bacteriaConserved Site