7T8S | pdb_00007t8s

Light Harvesting complex phycoerythrin PE 566, from the cryptophyte Cryptomonas pyrenoidifera

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
O	WD40	e7t8sO1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
M	WD40	e7t8sM1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
K	WD40	e7t8sK1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
I	WD40	e7t8sI1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
G	WD40	e7t8sG1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
E	WD40	e7t8sE1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
C	WD40	e7t8sC1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
A	WD40	e7t8sA1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
P	WD40	e7t8sP1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
L	WD40	e7t8sL1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
H	WD40	e7t8sH1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
D	WD40	e7t8sD1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
N	WD40	e7t8sN1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
J	WD40	e7t8sJ1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
F	WD40	e7t8sF1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)
B	WD40	e7t8sB1	A: alpha bundles	X: RNase A-like	H: Cytochrome P450	T: Cytochrome P450	F: WD40	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (utative)
L	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (utative)
H	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (utative)
D	3.90.510.10	Alpha Beta	Alpha-Beta Complex	Cryptophytan Phycoerythrin (Alpha-1 Chain)	Chain A	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G, I A, C, E, G, I, K, M, O	Phycoerythrin beta subunit	-	photosynthesis metabolic process cellular process	protein-containing complex intracellular anatomical structure membrane membrane protein complex intracellular membraneless organelle light-harvesting complex thylakoid membrane intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane phycobilisome thylakoid
D, H, L, P	phycoerythrin alpha-2 subunit	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome
B, F, J, N	phycoerythrin alpha-1 subunit	-	photosynthesis metabolic process cellular process	chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope chloroplast thylakoid membrane membrane-bounded organelle plastid membrane intracellular anatomical structure plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast membrane intracellular membraneless organelle intracellular membrane-bounded organelle thylakoid membrane organelle chloroplast thylakoid outer membrane cytoplasm photosynthetic membrane organelle membrane protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G, I A, C, E, G, I, K, M, O	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O	IPR012128	Phycobilisome, alpha/beta subunit	Family
D, H, L, P	IPR004228	Phycoerythrin alpha chain	Domain
D, H, L, P	IPR037011	Phycoerythrin-like alpha chain superfamily	Homologous Superfamily
D, H, L, P	IPR011070	Globular protein, non-globular alpha/beta subunit	Homologous Superfamily
B, F, J, N	IPR004228	Phycoerythrin alpha chain	Domain
B, F, J, N	IPR037011	Phycoerythrin-like alpha chain superfamily	Homologous Superfamily
B, F, J, N	IPR011070	Globular protein, non-globular alpha/beta subunit	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, C, E, G, I A, C, E, G, I, K, M, O	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.