7UDB
Cryo-EM structure of a synaptobrevin-Munc18-1-syntaxin-1 complex class 2
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Sec1_3rd | e7udbA1 | A: alpha complex topology | X: alpha-helical domain in sec1/munc18-like (SM) proteins (From Topology) | H: alpha-helical domain in sec1/munc18-like (SM) proteins (From Topology) | T: alpha-helical domain in sec1/munc18-like (SM) proteins | F: Sec1_3rd | ECOD (1.6) |
A | Sec1_1st_1 | e7udbA3 | A: a/b three-layered sandwiches | X: Rossmann-like domains in Sec1/munc18-like proteins (From Topology) | H: Rossmann-like domains in Sec1/munc18-like proteins (From Topology) | T: Rossmann-like domains in Sec1/munc18-like proteins | F: Sec1_1st_1 | ECOD (1.6) |
A | Sec1_2nd | e7udbA2 | A: a/b three-layered sandwiches | X: Rossmann-like domains in Sec1/munc18-like proteins (From Topology) | H: Rossmann-like domains in Sec1/munc18-like proteins (From Topology) | T: Rossmann-like domains in Sec1/munc18-like proteins | F: Sec1_2nd | ECOD (1.6) |
C | Synaptobrevin | e7udbC1 | A: extended segments | X: Synaptobrevin (From Topology) | H: Synaptobrevin (From Topology) | T: Synaptobrevin | F: Synaptobrevin | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00995 | Sec1 family (Sec1) | Sec1 family | - | Family | |
PF05739 | SNARE domain (SNARE) | SNARE domain | - | Family | |
PF00804 | Syntaxin (Syntaxin) | Syntaxin | Syntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins (Pfam:PF05739), and an N-terminal d ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR043154 | Sec1-like, domain 1 | Homologous Superfamily | |
IPR043127 | Sec1-like, domain 3a | Homologous Superfamily | |
IPR001619 | Sec1-like protein | Family | |
IPR036045 | Sec1-like superfamily | Homologous Superfamily | |
IPR027482 | Sec1-like, domain 2 | Homologous Superfamily | |
IPR016444 | Synaptobrevin/Vesicle-associated membrane protein | Family | |
IPR042855 | v-SNARE, coiled-coil homology domain | Domain | |
IPR001388 | Synaptobrevin-like | Family | |
IPR000727 | Target SNARE coiled-coil homology domain | Domain | |
IPR006012 | Syntaxin/epimorphin, conserved site | Conserved Site | |
IPR010989 | SNARE | Homologous Superfamily | |
IPR006011 | Syntaxin, N-terminal domain | Domain | |
IPR045242 | Syntaxin | Family |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
Chains | Resource Link | Group | Subgroup | Protein |
---|---|---|---|---|
mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | SNARE Protein Family | synaptobrevin-Munc18-1-syntaxin-1 complex class 2 |