7XL8 | pdb_00007xl8

Human Cx36/GJD2 (N-terminal deletion mutant) gap junction channel in soybean lipids (D6 symmetry)

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	TRAPP	e7xl8L1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
K	TRAPP	e7xl8K1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
J	TRAPP	e7xl8J1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
I	TRAPP	e7xl8I1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
H	TRAPP	e7xl8H1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
G	TRAPP	e7xl8G1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
F	TRAPP	e7xl8F1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
E	TRAPP	e7xl8E1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
D	TRAPP	e7xl8D1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
C	TRAPP	e7xl8C1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
B	TRAPP	e7xl8B1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: TRAPP	ECOD (develop294)
A	V-set	e7xl8A1	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: V-set	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Gap junction delta-2 protein	wide pore channel activity passive transmembrane transporter activity channel activity transporter activity gap junction channel activity transmembrane transporter activity	multicellular organismal process system process nervous system process biological regulation action potential transmission of nerve impulse cell communication neuronal action potential cellular process regulation of biological quality regulation of membrane potential trans-synaptic signaling synaptic signaling regulation of biological process multicellular organismal process system process nervous system process biological regulation action potential transmission of nerve impulse cell communication neuronal action potential cellular process regulation of biological quality regulation of membrane potential trans-synaptic signaling synaptic signaling regulation of biological process signaling anterograde trans-synaptic signaling cell-cell signaling chemical synaptic transmission sensory perception of light stimulus sensory perception visual perception	cell-cell junction protein-containing complex anchoring junction plasma membrane protein complex gap junction membrane plasma membrane membrane protein complex cell periphery cellular anatomical structure cell junction connexin complex synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR038359	Connexin, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000500	Connexin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR019570	Connexin, cysteine-rich domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013092	Connexin, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR002260	Gap junction delta-2 protein (Cx36)	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR017990	Connexin, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Pharos: Q9UKL4	myopia Ametropia lung carcinoma osteosarcoma refractive error facioscapulohumeral muscular dystrophy malignant glioma ovarian cancer large cell medulloblastoma psoriasis schizophrenia

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Channels: Gap Junctions and Related Channels	Connexin 36 (Cx36; GJD2) gap junction channel in detergents

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.