7XQP | pdb_00007xqp

PSI-LHCI-LHCII-Lhcb9 supercomplex of Physcomitrella patens


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8102497 3000850 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8102495 3000850 SCOP2B (2022-06-29)
CSCOP2B Superfamily4Fe-4S ferredoxins 8102489 3000020 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPhotosystem I subunit PsaD 8102343 3000951 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyElectron transport accessory proteins 8102303 3000325 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8102305 3000813 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyPhotosystem I reaction centre subunit VI 8102647 3002733 SCOP2B (2022-06-29)
ISCOP2B SuperfamilySubunit VIII of photosystem I reaction centre, PsaI 8102491 3000819 SCOP2B (2022-06-29)
JSCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8102487 3000824 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyPhotosystem I reaction center subunit XI, PsaL 8102341 3000870 SCOP2B (2022-06-29)
MSCOP2B SuperfamilySubunit XII of photosystem I reaction centre, PsaM 8102485 3000829 SCOP2B (2022-06-29)
P [auth 2]SCOP2B SuperfamilyChlorophyll a-b binding protein 8102307 3000343 SCOP2B (2022-06-29)
T [auth 6]SCOP2B SuperfamilyChlorophyll a-b binding protein 8102307 3000343 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ATTL, ATPgrasp_YheCDe7xqpA1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
BTTL, ATPgrasp_YheCDe7xqpB1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
CTTL, ATPgrasp_YheCDe7xqpC1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
DTTL, ATPgrasp_YheCDe7xqpD1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
ETTL, ATPgrasp_YheCDe7xqpE1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
FTTL, ATPgrasp_YheCDe7xqpF1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
GTTL, ATPgrasp_YheCDe7xqpG1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
HTTL, ATPgrasp_YheCDe7xqpH1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
ITTL, ATPgrasp_YheCDe7xqpI1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
JTTL, ATPgrasp_YheCDe7xqpJ1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
KTTL, ATPgrasp_YheCDe7xqpK1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
LTTL, ATPgrasp_YheCDe7xqpL1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
MTTL, ATPgrasp_YheCDe7xqpM1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
O [auth 1]TTL, ATPgrasp_YheCDe7xqp11 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
S [auth 5]TTL, ATPgrasp_YheCDe7xqp51 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
P [auth 2]TTL, ATPgrasp_YheCDe7xqp21 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
T [auth 6]TTL, ATPgrasp_YheCDe7xqp61 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
Q [auth 3]TTL, ATPgrasp_YheCDe7xqp31 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
U [auth 7]TTL, ATPgrasp_YheCDe7xqp71 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
R [auth 4]TTL, ATPgrasp_YheCDe7xqp41 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
V [auth 8]TTL, ATPgrasp_YheCDe7xqp81 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
W [auth 9]TTL, ATPgrasp_YheCDe7xqp91 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
X [auth a]TTL, ATPgrasp_YheCDe7xqpa1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
Y [auth b]TTL, ATPgrasp_YheCDe7xqpb1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)
Z [auth c]TTL, ATPgrasp_YheCDe7xqpc1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TTL, ATPgrasp_YheCDECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
PF02531PsaD (PsaD)PsaD- Family
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
PF02507Photosystem I reaction centre subunit III (PSI_PsaF)Photosystem I reaction centre subunit III- Family
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
PF03244Photosystem I reaction centre subunit VI (PSI_PsaH)Photosystem I reaction centre subunit VI- Family
PF00796Photosystem I reaction centre subunit VIII (PSI_8)Photosystem I reaction centre subunit VIII- Family
PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
PF01241Photosystem I psaG / psaK (PSI_PSAK)Photosystem I psaG / psaK- Family
PF02605Photosystem I reaction centre subunit XI (PsaL)Photosystem I reaction centre subunit XI- Family
PF07465Photosystem I protein M (PsaM) (PsaM)Photosystem I protein M (PsaM)- Family
N [auth O]PF22832PsaO transmembrane domain (PsaO_TMD)PsaO transmembrane domainPsaO is one of the nine membrane-embedded subunits of photosystem I. This entry represents the transmembrane domain that was shown to consists of three transmembrane helices arranged in an L-shape [1]. Domain
O [auth 1],
S [auth 5]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
P [auth 2],
T [auth 6]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
Q [auth 3],
U [auth 7]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
R [auth 4],
V [auth 8]
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
W [auth 9]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Photosystem I P700 chlorophyll a apoprotein A1
Photosystem I P700 chlorophyll a apoprotein A2
Photosystem I iron-sulfur center
Predicted protein PsaD
PsaE-
PSI-F-
PSI-G-
PsaH photosystem I reaction center subunit-
Photosystem I reaction center subunit VIII-
Photosystem I reaction center subunit IX-
PsaK-
PSI subunit V-
Photosystem I reaction center subunit XII-
N [auth O]PsaO- - -
O [auth 1],
S [auth 5]
Chlorophyll a-b binding protein, chloroplastic
P [auth 2],
T [auth 6]
Chlorophyll a-b binding protein, chloroplastic
Q [auth 3],
U [auth 7]
Chlorophyll a-b binding protein, chloroplastic
R [auth 4],
V [auth 8]
Chlorophyll a-b binding protein, chloroplastic
W [auth 9]Chlorophyll a-b binding protein, chloroplastic
X [auth a],
Y [auth b],
Z [auth c]
Chlorophyll a-b binding protein, chloroplastic

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR006243Photosystem I PsaAFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR050157Photosystem I iron-sulfur centerFamily
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR017494Photosystem I reaction center subunit VFamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR004928Photosystem I PsaH, reaction centre subunit VIFamily
IPR036357Photosystem I reaction centre subunit VIII superfamilyHomologous Superfamily
IPR001302Photosystem I reaction centre subunit VIIIFamily
IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
IPR023618Photosystem I PsaG/PsaK domain, chloroplasticHomologous Superfamily
IPR016370Photosystem I reaction center subunit V/PsaK, plantFamily
IPR000549Photosystem I reaction center subunit V/PsaKFamily
IPR017493Photosystem I reaction center subunit psaK, plantFamily
IPR003757Photosystem I PsaL, reaction centre subunit XIDomain
IPR022980Photosystem I, reaction centre subunit XIFamily
IPR036592Photosystem I PsaL, reaction centre subunit XI superfamilyHomologous Superfamily
IPR010010Photosystem I PsaM, reaction centreFamily
IPR037279Photosystem I PsaM, reaction centre superfamilyHomologous Superfamily
N [auth O]IPR017498Photosystem I PsaOFamily
O [auth 1],
S [auth 5]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O [auth 1],
S [auth 5]
IPR022796Chlorophyll A-B binding proteinFamily
P [auth 2],
T [auth 6]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
P [auth 2],
T [auth 6]
IPR022796Chlorophyll A-B binding proteinFamily
Q [auth 3],
U [auth 7]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
Q [auth 3],
U [auth 7]
IPR022796Chlorophyll A-B binding proteinFamily
R [auth 4],
V [auth 8]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
R [auth 4],
V [auth 8]
IPR022796Chlorophyll A-B binding proteinFamily
W [auth 9]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
W [auth 9]IPR022796Chlorophyll A-B binding proteinFamily
X [auth a],
Y [auth b],
Z [auth c]
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
X [auth a],
Y [auth b],
Z [auth c]
IPR022796Chlorophyll A-B binding proteinFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
X [auth a],
Y [auth b],
Z [auth c]
TPO Parent Component: THR

RESIDAA0038

PSI-MOD :  O-phospho-L-threonine MOD:00047