Annotations: 7ZDI

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	LHC_like	e7zdiA1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
D [auth C]	LHC_like	e7zdiC1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
F [auth E]	LHC_like	e7zdiE1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
H [auth G]	LHC_like	e7zdiG1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
J [auth I]	LHC_like	e7zdiI1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
L [auth K]	LHC_like	e7zdiK1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
N [auth M]	LHC_like	e7zdiM1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
P [auth O]	LHC_like	e7zdiO1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
R [auth Q]	LHC_like	e7zdiQ1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
B	LHC_like	e7zdiB1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
E [auth D]	LHC_like	e7zdiD1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
G [auth F]	LHC_like	e7zdiF1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
I [auth H]	LHC_like	e7zdiH1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
K [auth J]	LHC_like	e7zdiJ1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
M [auth L]	LHC_like	e7zdiL1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
O [auth N]	LHC_like	e7zdiN1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
Q [auth P]	LHC_like	e7zdiP1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)
S [auth R]	LHC_like	e7zdiR1	A: extended segments	X: Bacterial light-harvesting complex subunits (From Topology)	H: Bacterial light-harvesting complex subunits (From Topology)	T: Bacterial light-harvesting complex subunits	F: LHC_like	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	Light-harvesting protein	electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	Light-harvesting protein	electron transfer activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity chlorophyll binding binding bacteriochlorophyll binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle
C [auth S]	PucA-LH2-gamma	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	IPR018332	Antenna complex, alpha subunit	Family
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	IPR035889	Light-harvesting complex	Homologous Superfamily
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	IPR000066	Antenna complex, alpha/beta subunit	Domain
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	IPR035889	Light-harvesting complex	Homologous Superfamily
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	IPR023623	Antenna complex, beta subunit, conserved site	Conserved Site
B, E [auth D], G [auth F], I [auth H], K [auth J], B, E [auth D], G [auth F], I [auth H], K [auth J], M [auth L], O [auth N], Q [auth P], S [auth R]	IPR002362	Light-harvesting protein B beta chain	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, D [auth C], E [auth D], F [auth E] A, B, D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R]	OPM	Transmembrane	Alpha-helical polytopic	Photosystems	Light-harvesting complexes from bacteria

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, D [auth C], E [auth D], F [auth E] A, B, D [auth C], E [auth D], F [auth E], G [auth F], H [auth G], I [auth H], J [auth I], K [auth J], L [auth K], M [auth L], N [auth M], O [auth N], P [auth O], Q [auth P], R [auth Q], S [auth R]	PDBTM	Annotated as membrane protein by PDBTM

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, D [auth C], F [auth E], H [auth G], J [auth I], A, D [auth C], F [auth E], H [auth G], J [auth I], L [auth K], N [auth M], P [auth O], R [auth Q]	CXM	Parent Component: MET RESID: AA0363 , AA0493 PSI-MOD : N-carboxy-L-methionine MOD:00368 , N-(dihydroxymethyl)-L-methionine (fMet) MOD:01446 , N-(dihydroxymethyl)-L-methionine (Met) MOD:01447

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.