8AFF | pdb_00008aff

Wild type oxalyl-CoA synthetase Pcs60p

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	F5_F8_type_C	e8affL1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: F5_F8_type_C	ECOD (v295)
K	F5_F8_type_C	e8affK1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: F5_F8_type_C	ECOD (v295)
J	F5_F8_type_C	e8affJ1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: F5_F8_type_C	ECOD (v295)
I	Ribosomal_L27A, Ribosomal_L18	e8affI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
H	F5_F8_type_C	e8affH1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: F5_F8_type_C	ECOD (v295)
G	F5_F8_type_C	e8affG1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: F5_F8_type_C	ECOD (v295)
F	F5_F8_type_C	e8affF1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: F5_F8_type_C	ECOD (v295)
E	F5_F8_type_C	e8affE1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: F5_F8_type_C	ECOD (v295)
D	Ribosomal_L27A, Ribosomal_L18	e8affD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
C	F5_F8_type_C	e8affC1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: F5_F8_type_C	ECOD (v295)
B	F5_F8_type_C	e8affB1	A: alpha arrays	X: cradle loop barrel	H: Cytochrome P450	T: Cytochrome P450	F: F5_F8_type_C	ECOD (v295)
A	Ribosomal_L27A, Ribosomal_L18	e8affA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
I	3.30.300.30	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (utative)
D	3.30.300.30	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (utative)
A	3.30.300.30	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00501	AMP-binding enzyme (AMP-binding)	AMP-binding enzyme	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF13193	AMP-binding enzyme C-terminal domain (AMP-binding_C)	AMP-binding enzyme C-terminal domain	This is a small domain that is found C terminal to Pfam:PF00501. It has a central beta sheet core that is flanked by alpha helices.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Oxalate--CoA ligase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding RNA binding nucleic acid binding mRNA binding CoA-ligase activity fatty acid ligase activity ligase activity, forming carbon-sulfur bonds medium-chain fatty acid-CoA ligase activity fatty acid-CoA ligase activity catalytic activity acid-thiol ligase activity ligase activity ATP-dependent activity oxalate-CoA ligase activity	oxalate catabolic process catabolic process oxoacid metabolic process dicarboxylic acid metabolic process carboxylic acid metabolic process dicarboxylic acid catabolic process oxalate metabolic process carboxylic acid catabolic process small molecule metabolic process metabolic process cellular process small molecule catabolic process fatty acid metabolic process primary metabolic process oxalate catabolic process catabolic process oxoacid metabolic process dicarboxylic acid metabolic process carboxylic acid metabolic process dicarboxylic acid catabolic process oxalate metabolic process carboxylic acid catabolic process small molecule metabolic process metabolic process cellular process small molecule catabolic process fatty acid metabolic process primary metabolic process monocarboxylic acid metabolic process lipid metabolic process	membrane-bounded organelle intracellular anatomical structure membrane peroxisome intracellular membrane-bounded organelle microbody membrane intracellular organelle cellular anatomical structure bounding membrane of organelle organelle peroxisomal membrane microbody cytoplasm organelle membrane membrane-bounded organelle intracellular anatomical structure membrane peroxisome intracellular membrane-bounded organelle microbody membrane intracellular organelle cellular anatomical structure bounding membrane of organelle organelle peroxisomal membrane microbody cytoplasm organelle membrane peroxisomal matrix membrane-enclosed lumen intracellular organelle lumen organelle lumen microbody lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR045851	AMP-binding enzyme domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR020845	AMP-binding, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR042099	ANL, N-terminal domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR025110	AMP-binding enzyme, C-terminal domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR000873	AMP-dependent synthetase/ligase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR045310	Oxalate--CoA ligase Pcs60-like	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.