8APO | pdb_00008apo

Structure of the mitochondrial ribosome from Polytomella magna with tRNAs bound to the A and P sites

External Resource: Annotation

Domain Annotation: ECOD Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth Aa]	RNA_pol_Rpb6	e8apoAa1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
K [auth Ab]	Ribosomal_L27A, Ribosomal_L18	e8apoAb1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
L [auth Ac]	Ribosomal_L27A, Ribosomal_L18	e8apoAc1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
M [auth Ad]	RNA_pol_Rpb6	e8apoAd1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
N [auth Ae]	Ribosomal_L27A, Ribosomal_L18	e8apoAe1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
O [auth Af]	RNA_pol_Rpb6	e8apoAf1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
P [auth Ah]	Ribosomal_L27A, Ribosomal_L18	e8apoAh1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
Q [auth Ai]	RNA_pol_Rpb6	e8apoAi1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
R [auth Aj]	Ribosomal_L27A, Ribosomal_L18	e8apoAj1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
S [auth Ak]	Ribosomal_L27A, Ribosomal_L18	e8apoAk1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
T [auth Al]	Ribosomal_L27A, Ribosomal_L18	e8apoAl1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
V [auth An]	Ribosomal_L27A, Ribosomal_L18	e8apoAn1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
W [auth Ao]	RNA_pol_Rpb6	e8apoAo1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
X [auth Ap]	Ribosomal_L27A, Ribosomal_L18	e8apoAp1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
Y [auth Aq]	Ribosomal_L27A, Ribosomal_L18	e8apoAq1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
Z [auth Ar]	Ribosomal_L27A, Ribosomal_L18	e8apoAr1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
AA [auth As]	Ribosomal_L27A, Ribosomal_L18	e8apoAs1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
BA [auth At]	Ribosomal_L27A, Ribosomal_L18	e8apoAt1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
CA [auth Au]	Ribosomal_L27A, Ribosomal_L18	e8apoAu1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
DA [auth Av]	RNA_pol_Rpb6	e8apoAv1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
EA [auth Aw]	RNA_pol_Rpb6	e8apoAw1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
HA [auth Az]	RNA_pol_Rpb6	e8apoAz1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
IA [auth AA]	RNA_pol_Rpb6	e8apoAA1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
JA [auth AB]	RNA_pol_Rpb6	e8apoAB1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
LA [auth AD]	RNA_pol_Rpb6	e8apoAD1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
MA [auth AE]	RNA_pol_Rpb6	e8apoAE1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
NA [auth AF]	Ribosomal_L27A, Ribosomal_L18	e8apoAF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
OA [auth AG]	RNA_pol_Rpb6	e8apoAG1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
PA [auth AH]	Ribosomal_L27A, Ribosomal_L18	e8apoAH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
LB [auth Ba]	Ribosomal_L27A, Ribosomal_L18	e8apoBa1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
MB [auth Bb]	RNA_pol_Rpb6	e8apoBb1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
NB [auth Bc]	Ribosomal_L36e	e8apoBc01	A: alpha arrays	X: Fe-binding domain in prismane-like proteins	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ribosomal_L36e	ECOD (v295)
OB [auth Bd]	Ribosomal_L27A, Ribosomal_L18	e8apoBd1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
PB [auth Be]	Ribosomal_L27A, Ribosomal_L18	e8apoBe1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
QB [auth Bf]	RNA_pol_Rpb6	e8apoBf1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
RB [auth Bg]	RNA_pol_Rpb6	e8apoBg1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
TB [auth Bi]	Ribosomal_L27A, Ribosomal_L18	e8apoBi1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
VB [auth Bk]	RNA_pol_Rpb6	e8apoBk1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
WB [auth Bl]	RNA_pol_Rpb6	e8apoBl1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
XB [auth Bm]	RNA_pol_Rpb6	e8apoBm1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
YB [auth Bn]	RNA_pol_Rpb6	e8apoBn1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
AC [auth Bp]	Ribosomal_L27A, Ribosomal_L18	e8apoBp1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
BC [auth Bq]	Ribosomal_L27A, Ribosomal_L18	e8apoBq1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
CC [auth Br]	Ribosomal_L27A, Ribosomal_L18	e8apoBr1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
DC [auth Bs]	RNA_pol_Rpb6	e8apoBs1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
EC [auth Bt]	RNA_pol_Rpb6	e8apoBt1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
FC [auth Bu]	Ribosomal_L27A, Ribosomal_L18	e8apoBu1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
GC [auth Bv]	RNA_pol_Rpb6	e8apoBv1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: RNA_pol_Rpb6	ECOD (v295)
HC [auth Bw]	Ribosomal_L36e	e8apoBw01	A: alpha arrays	X: Fe-binding domain in prismane-like proteins	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Ribosomal_L36e	ECOD (v295)
LC [auth BA]	Ribosomal_L27A, Ribosomal_L18	e8apoBA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.