Cryo-EM structure of the Arabidopsis thaliana I+III2 supercomplex (Complete conformation 1 composition)
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I | Ribosomal_L3 | e8bq5I1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| H | Ribosomal_L3 | e8bq5H1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| G | Ribosomal_L3 | e8bq5G1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| F | Ribosomal_L3 | e8bq5F1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| NB [auth BI] | Ribosomal_L3 | e8bq5BI1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| DB [auth AI] | Ribosomal_L3 | e8bq5AI1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| MB [auth BH] | Ribosomal_L3 | e8bq5BH1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| CB [auth AH] | Ribosomal_L3 | e8bq5AH1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| LB [auth BG] | Ribosomal_L3 | e8bq5BG1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| BB [auth AG] | Ribosomal_L3 | e8bq5AG1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| KB [auth BF] | Ribosomal_L3 | e8bq5BF1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| AB [auth AF] | Ribosomal_L3 | e8bq5AF1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| ZA [auth AE] | Ribosomal_L3 | e8bq5AE1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| JB [auth BE] | Ribosomal_L3 | e8bq5BE1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| YA [auth AD] | Ribosomal_L3 | e8bq5AD1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| IB [auth BD] | Ribosomal_L3 | e8bq5BD1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| XA [auth AC] | Ribosomal_L3 | e8bq5AC1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| HB [auth BC] | Ribosomal_L3 | e8bq5BC1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| E | Ribosomal_L3 | e8bq5E1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| WA [auth AB] | Aminotran_1_2 | e8bq5AB1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Aminotran_1_2 | ECOD (v295.2) |
| GB [auth BB] | Aminotran_1_2 | e8bq5BB1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Aminotran_1_2 | ECOD (v295.2) |
| VA [auth AA] | Ribosomal_L3 | e8bq5AA1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| FB [auth BA] | Ribosomal_L3 | e8bq5BA1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| UA [auth z] | Aminotran_1_2 | e8bq5z1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Aminotran_1_2 | ECOD (v295.2) |
| TA [auth y] | Aminotran_1_2 | e8bq5y1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Aminotran_1_2 | ECOD (v295.2) |
| SA [auth x] | Ribosomal_L3 | e8bq5x1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| PA [auth q] | Ribosomal_L3 | e8bq5q1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| D | Ribosomal_L3 | e8bq5D1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| MA [auth n] | Aminotran_1_2 | e8bq5n1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Aminotran_1_2 | ECOD (v295.2) |
| IA [auth j] | Ribosomal_L3 | e8bq5j1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| EA [auth e] | Ribosomal_L3 | e8bq5e1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| C | Ribosomal_L3 | e8bq5C1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| AA [auth a] | Ribosomal_L3 | e8bq5a1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| Z | Ribosomal_L3 | e8bq5Z1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| X | Ribosomal_L3 | e8bq5X1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| W | Ribosomal_L3 | e8bq5W1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| V | Aminotran_1_2 | e8bq5V1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Aminotran_1_2 | ECOD (v295.2) |
| U | Ribosomal_L3 | e8bq5U1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| T | Ribosomal_L3 | e8bq5T1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| B | Ribosomal_L3 | e8bq5B1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| S | Ribosomal_L3 | e8bq5S1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| R | Ribosomal_L3 | e8bq5R1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| Q | Ribosomal_L3 | e8bq5Q1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| P | Ribosomal_L3 | e8bq5P1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| O | Ribosomal_L3 | e8bq5O1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| N | Ribosomal_L3 | e8bq5N1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| M | Ribosomal_L3 | e8bq5M1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| L | Aminotran_1_2 | e8bq5L1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Aminotran_1_2 | ECOD (v295.2) |
| K | Ribosomal_L3 | e8bq5K1 | A: alpha arrays | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: Ribosomal_L3 | ECOD (v295.2) |
| J | Aminotran_1_2 | e8bq5J1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Aminotran_1_2 | ECOD (v295.2) |
| A | Aminotran_1_2 | e8bq5A1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Aminotran_1_2 | ECOD (v295.2) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Electron transport chain complex I (NADH dehydrogenase) and supercomplexes | H+ or Na+ translocating NADH dehydrogenase |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Electron Transport Chain Supercomplexes (Respirasome) | Respiratory supercomplex I-III2, Complete composition |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| FA [auth f] | FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 | |
| FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 | |