8D6A | pdb_00008d6a

Cryo-EM structure of human LIF signaling complex: model containing the interaction core region


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth D]SCOP2B Superfamily4-helical cytokines 8039173 3001717 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyFibronectin type III 8055533 3002063 SCOP2B (2022-06-29)
B [auth A]SCOP2B SuperfamilyFibronectin type III 8055145 3002063 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth D]F_UNCLASSIFIEDe8d6aD1 A: alpha bundlesX: Ferritin/Heme oxygenase/4-helical cytokinesH: 4-helical cytokines (From Topology)T: 4-helical cytokinesF: F_UNCLASSIFIEDECOD (1.6)
B [auth A]F_UNCLASSIFIEDe8d6aA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)
C [auth B]F_UNCLASSIFIEDe8d6aB3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: F_UNCLASSIFIEDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth A]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth D]PF01291LIF / OSM family (LIF_OSM)LIF / OSM familyDomain
B [auth A]PF25552Leukemia inhibitory factor receptor D4 domain (LIFR_D4)Leukemia inhibitory factor receptor D4 domainThis entry describes the domain 4 in Leukemia inhibitory factor regulator (LIFR) and other type I cytokine receptors found in mammals. They are involved in signal transduction for various cytokines, playing crucial roles in immune response, hematopoi ...This entry describes the domain 4 in Leukemia inhibitory factor regulator (LIFR) and other type I cytokine receptors found in mammals. They are involved in signal transduction for various cytokines, playing crucial roles in immune response, hematopoiesis, and development. LIFR extracellular region is composed of D1-D2 (Pfam:PF17971) which is a cytokine binding homology region (CHR) followed by an Ig-like domain D3 (Pfam:PF21177), another CHR region composed of D4 and D5 [1-2] and three membrane-proximal fibronectin type-III (FNIII) domains (Pfam:PF00041).
Domain
B [auth A]PF00041Fibronectin type III domain (fn3)Fibronectin type III domainDomain
C [auth B]PF21177Leukemia inhibitory factor receptor, Ig-like domain (LIF-R_Ig-like)Leukemia inhibitory factor receptor, Ig-like domainThis domain is found in Leukemia inhibitory factor receptor from mouse (LIF-R) and similar proteins from animals. LIF-R binds a cytokine that acts on many cell types including embryonic stem cells, megakaryocytes, osteoblasts, and neuronal cells. The ...This domain is found in Leukemia inhibitory factor receptor from mouse (LIF-R) and similar proteins from animals. LIF-R binds a cytokine that acts on many cell types including embryonic stem cells, megakaryocytes, osteoblasts, and neuronal cells. The extracellular region of this protein shows a modular structure with two cytokine-binding modules (CBM, with Pfam:PF17971 representing the second subdomain of CBM1, D2) separated by an Ig-like domain (this entry) and followed by three membrane- proximal fibronectin type-III (FNIII) domains (Pfam:PF00041) This domain interacts directly with site 3 of Cilliary Neutrophic Factor (CNTF) [1,2].
Domain
C [auth B]PF25552Leukemia inhibitory factor receptor D4 domain (LIFR_D4)Leukemia inhibitory factor receptor D4 domainThis entry describes the domain 4 in Leukemia inhibitory factor regulator (LIFR) and other type I cytokine receptors found in mammals. They are involved in signal transduction for various cytokines, playing crucial roles in immune response, hematopoi ...This entry describes the domain 4 in Leukemia inhibitory factor regulator (LIFR) and other type I cytokine receptors found in mammals. They are involved in signal transduction for various cytokines, playing crucial roles in immune response, hematopoiesis, and development. LIFR extracellular region is composed of D1-D2 (Pfam:PF17971) which is a cytokine binding homology region (CHR) followed by an Ig-like domain D3 (Pfam:PF21177), another CHR region composed of D4 and D5 [1-2] and three membrane-proximal fibronectin type-III (FNIII) domains (Pfam:PF00041).
Domain
C [auth B]PF00041Fibronectin type III domain (fn3)Fibronectin type III domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D]Leukemia inhibitory factor
B [auth A]Interleukin-6 receptor subunit beta
C [auth B]Leukemia inhibitory factor receptor

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth D]PharosP15018
B [auth A]PharosP40189
C [auth B]PharosP42702