Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
P [auth L]SCOP2B SuperfamilyNucleic acid-binding proteins 8098750 3000135 SCOP2B (2022-06-29)
E [auth P]SCOP2B SuperfamilyRibosomal protein S16 8066557 3000680 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
K [auth E]Ribosomal_S5_Ce8d8jE1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
K [auth E]Ribosomal_S5e8d8jE2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
L [auth F]Ribosomal_S6_1e8d8jF1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6_1ECOD (1.6)
N [auth H]Ribosomal_S8_Ne8d8jH2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
N [auth H]Ribosomal_S8_Ce8d8jH1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
P [auth L]Ribosom_S12_S23e8d8jL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
E [auth P]Ribosomal_S16e8d8jP1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
G [auth R]Ribosomal_S18e8d8jR1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
L [auth F]3.30.70.60 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits Ribosomal protein S6/Translation elongation factor EF1BCATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 0]PF09243Mitochondrial small ribosomal subunit Rsm22 (Rsm22)Mitochondrial small ribosomal subunit Rsm22- Family
J [auth D]PF01535PPR repeat (PPR)PPR repeat- Repeat
J [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...Domain
K [auth E]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
K [auth E]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
L [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
M [auth 6]PF12298Eukaryotic mitochondrial regulator protein (Bot1p)Eukaryotic mitochondrial regulator protein- Family
N [auth H]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
P [auth L]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
D [auth O]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
E [auth P]PF00886Ribosomal protein S16 (Ribosomal_S16)Ribosomal protein S16- Family
F [auth Q]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
G [auth R]PF01084Ribosomal protein S18 (Ribosomal_S18)Ribosomal protein S18- Family
I [auth 2]PF09597Small ribosomal subunit protein mS41 SAM domain (SAM_Ribosomal_mS41)Small ribosomal subunit protein mS41 SAM domainThis entry represents a SAM-like domain found in fungal mitoribosome protein mS41. The mitochondrion-specific ribosomal protein mS41 family comprises proteins that are integral components of the mitochondrial ribosome, also known as the mitoribosome ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 0]Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial
J [auth D]37S ribosomal protein NAM9, mitochondrial
K [auth E]37S ribosomal protein S5, mitochondrial
L [auth F]37S ribosomal protein MRP17, mitochondrial
M [auth 6]37S ribosomal protein S35, mitochondrial
N [auth H]37S ribosomal protein S8, mitochondrial
O [auth a]15S ribosomal RNA---
P [auth L]uS12m
B [auth 5]37S ribosomal protein MRP13, mitochondrial
C [auth d]Mitochondrial group I intron splicing factor CCM1
D [auth O]37S ribosomal protein S28, mitochondrial
E [auth P]37S ribosomal protein S16, mitochondrial
F [auth Q]37S ribosomal protein S17, mitochondrial
G [auth R]37S ribosomal protein RSM18, mitochondrial
H [auth V]37S ribosomal protein PET123, mitochondrial
I [auth 2]Protein FYV4, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 0]IPR015324Ribosomal protein Rsm22-likeFamily
A [auth 0]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
A [auth 0]IPR052571Mitochondrial RNA MethyltransferaseFamily
A [auth 0]IPR016522Ribosome assembly protein RSM22, mitochondrial, budding yeastFamily
J [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
J [auth D]IPR002942RNA-binding S4 domainDomain
J [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
J [auth D]IPR022801Small ribosomal subunit protein uS4Family
K [auth E]IPR000851Small ribosomal subunit protein uS5Family
K [auth E]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
K [auth E]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
K [auth E]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
K [auth E]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
K [auth E]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
L [auth F]IPR000529Small ribosomal subunit protein bS6Family
L [auth F]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
L [auth F]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
M [auth 6]IPR021036Small ribosomal subunit protein mS45Family
N [auth H]IPR000630Small ribosomal subunit protein uS8Family
N [auth H]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
P [auth L]IPR006032Small ribosomal subunit protein uS12Family
P [auth L]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth L]IPR005679Ribosomal protein uS12, bacterial-typeFamily
C [auth d]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
C [auth d]IPR002885Pentatricopeptide repeatRepeat
D [auth O]IPR005290Small ribosomal subunit protein uS15, bacterial-typeFamily
D [auth O]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
D [auth O]IPR000589Small ribosomal subunit protein uS15Family
E [auth P]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
E [auth P]IPR000307Small ribosomal subunit protein bS16Family
E [auth P]IPR020592Small ribosomal subunit protein bS16, conserved siteConserved Site
F [auth Q]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
F [auth Q]IPR000266Small ribosomal subunit protein uS17Family
G [auth R]IPR001648Small ribosomal subunit protein bS18Family
G [auth R]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
I [auth 2]IPR019083Small ribosomal subunit protein mS41, SAM domainDomain
I [auth 2]IPR039603Small ribosomal subunit protein mS41Family