Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052815 3002143 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053109 3000334 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal protein L30p/L7e 8052917 3001378 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052916 3002152 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyL30e-like 8063962 3001739 SCOP2B (2022-06-29)
L [auth Q]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095970 3001045 SCOP2B (2022-06-29)
P [auth f]SCOP2B SuperfamilyTranslational proteins 8087451 3000811 SCOP2B (2022-06-29)
Q [auth i]SCOP2B SuperfamilyRibosomal protein L36e 8053115 3002161 SCOP2B (2022-06-29)
T [auth o]SCOP2B SuperfamilyRNA-binding domain, RBD 8061969 3000110 SCOP2B (2022-06-29)
Y [auth O]SCOP2B SuperfamilyRibosomal protein L13 8066053 3001134 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CF_UNCLASSIFIEDe8e5tC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: F_UNCLASSIFIEDECOD (1.6)
CF_UNCLASSIFIEDe8e5tC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: F_UNCLASSIFIEDECOD (1.6)
DF_UNCLASSIFIEDe8e5tD1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: F_UNCLASSIFIEDECOD (1.6)
EF_UNCLASSIFIEDe8e5tE1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
FF_UNCLASSIFIEDe8e5tF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)
GF_UNCLASSIFIEDe8e5tG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: F_UNCLASSIFIEDECOD (1.6)
H [auth K]F_UNCLASSIFIEDe8e5tK1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
H [auth K]F_UNCLASSIFIEDe8e5tK2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: F_UNCLASSIFIEDECOD (1.6)
I [auth L]F_UNCLASSIFIEDe8e5tL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: F_UNCLASSIFIEDECOD (1.6)
J [auth M]F_UNCLASSIFIEDe8e5tM1 A: beta barrelsX: SH3H: SH3T: SH3F: F_UNCLASSIFIEDECOD (1.6)
K [auth N]F_UNCLASSIFIEDe8e5tN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: F_UNCLASSIFIEDECOD (1.6)
L [auth Q]F_UNCLASSIFIEDe8e5tQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: F_UNCLASSIFIEDECOD (1.6)
M [auth S]F_UNCLASSIFIEDe8e5tS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
N [auth b]F_UNCLASSIFIEDe8e5tb1 A: a/b three-layered sandwichesX: Anticodon-binding domain of Class II aaRS (From Topology)H: Anticodon-binding domain of Class II aaRS (From Topology)T: Anticodon-binding domain of Class II aaRSF: F_UNCLASSIFIEDECOD (1.6)
O [auth e]F_UNCLASSIFIEDe8e5te1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: F_UNCLASSIFIEDECOD (1.6)
P [auth f]F_UNCLASSIFIEDe8e5tf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: F_UNCLASSIFIEDECOD (1.6)
Q [auth i]F_UNCLASSIFIEDe8e5ti1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: F_UNCLASSIFIEDECOD (1.6)
U [auth p]F_UNCLASSIFIEDe8e5tp1 A: alpha duplicates or obligate multimersX: RNA helicase Hera dimerization domain (From Topology)H: RNA helicase Hera dimerization domain (From Topology)T: RNA helicase Hera dimerization domainF: F_UNCLASSIFIEDECOD (1.6)
U [auth p]F_UNCLASSIFIEDe8e5tp2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: F_UNCLASSIFIEDECOD (1.6)
W [auth t]F_UNCLASSIFIEDe8e5tt1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: F_UNCLASSIFIEDECOD (1.6)
X [auth z]F_UNCLASSIFIEDe8e5tz1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: F_UNCLASSIFIEDECOD (1.6)
Y [auth O]F_UNCLASSIFIEDe8e5tO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: F_UNCLASSIFIEDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.30.390.110 Alpha Beta 2-Layer Sandwich Enolase-like domain 1CATH (utative)
K [auth N]3.40.1120.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein L15CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 5]PF03914CBF/Mak21 family (CBF)CBF/Mak21 family- Repeat
B [auth 6]PF03715Noc2p family (Noc2)Noc2p family- Family
PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. Domain
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeDomain
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...Domain
H [auth K]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10. Domain
J [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
J [auth M]PF00467KOW motif (KOW)KOW motif- Family
K [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
M [auth S]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
Y [auth O]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...Domain
Y [auth O]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 5]Ribosome biogenesis protein MAK21
B [auth 6]NOC2 isoform 1
60S ribosomal protein L4-A
Protein MAK16-
60S ribosomal protein L6-A
60S ribosomal protein L7-A
60S ribosomal protein L8-A
H [auth K]Proteasome-interacting protein CIC1
I [auth L]60S ribosomal protein L13-A
J [auth M]60S ribosomal protein L14-A
K [auth N]60S ribosomal protein L15-A
L [auth Q]60S ribosomal protein L18-A
M [auth S]60S ribosomal protein L20-A
N [auth b]Ribosome biogenesis protein BRX1
O [auth e]60S ribosomal protein L32
P [auth f]60S ribosomal protein L33-A
Q [auth i]60S ribosomal protein L36-A
R [auth m]rRNA-processing protein EBP2
S [auth n]Pescadillo homolog
T [auth o]Ribosome biogenesis protein 15
U [auth p]ATP-dependent RNA helicase HAS1
V [auth s]Ribosome biogenesis protein ERB1
W [auth t]Ribosome biogenesis protein RLP7
X [auth z]Ribosomal RNA-processing protein 1-
Y [auth O]60S ribosomal protein L16-A
Z [auth 1]25S ribosomal RNA---
AA [auth 2]5.8S ribosomal RNA---
BA [auth 3]ITS2 ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 5]IPR040155CEBPZ/Mak21-likeFamily
A [auth 5]IPR016024Armadillo-type foldHomologous Superfamily
A [auth 5]IPR005612CCAAT-binding factorDomain
B [auth 6]IPR005343Nucleolar complex protein 2Family
IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
IPR002136Large ribosomal subunit protein uL4Family
IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR006958Mak16 proteinFamily
IPR029004Ribosomal eL28/Mak16Domain
IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR000915Large ribosomal subunit protein eL6Family
IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
IPR039699Large ribosomal subunit protein uL30Family
IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
H [auth K]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
H [auth K]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
I [auth L]IPR001380Large ribosomal subunit protein eL13Family
I [auth L]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
J [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
J [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
J [auth M]IPR039660Large ribosomal subunit protein eL14Family
J [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
J [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
J [auth M]IPR005824KOWDomain
K [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
K [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
K [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
K [auth N]IPR000439Large ribosomal subunit protein eL15Family
L [auth Q]IPR021131Large ribosomal subunit protein uL15/eL18Domain
L [auth Q]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
L [auth Q]IPR000039Large ribosomal subunit protein eL18Family
L [auth Q]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
M [auth S]IPR028877Large ribosomal subunit protein eL20Family
M [auth S]IPR023573Large ribosomal subunit protein eL20 domainDomain
M [auth S]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
N [auth b]IPR026532Ribosome biogenesis protein BRX1Family
N [auth b]IPR007109Brix domainDomain
O [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
O [auth e]IPR001515Large ribosomal subunit protein eL32Family
O [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
P [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
P [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
P [auth f]IPR001780Large ribosomal subunit protein eL33Family
P [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
Q [auth i]IPR000509Large ribosomal subunit protein eL36Family
Q [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
R [auth m]IPR008610Eukaryotic rRNA processingFamily
S [auth n]IPR010613PescadilloFamily
S [auth n]IPR001357BRCT domainDomain
S [auth n]IPR036420BRCT domain superfamilyHomologous Superfamily
T [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
T [auth o]IPR000504RNA recognition motif domainDomain
T [auth o]IPR034469Ribosome biogenesis protein 15, RNA recognition motifDomain
T [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
U [auth p]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
U [auth p]IPR014014RNA helicase, DEAD-box type, Q motifDomain
U [auth p]IPR025313ATP-dependent rRNA helicase SPB4-like, C-terminal extensionDomain
U [auth p]IPR011545DEAD/DEAH box helicase domainDomain
U [auth p]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
U [auth p]IPR001650Helicase, C-terminal domain-likeDomain
U [auth p]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
U [auth p]IPR044773DDX18/Has1, DEAD-box helicase domainDomain
V [auth s]IPR019775WD40 repeat, conserved siteConserved Site
V [auth s]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
V [auth s]IPR028598WD repeat BOP1/Erb1Family
V [auth s]IPR001680WD40 repeatRepeat
V [auth s]IPR012953BOP1, N-terminal domainDomain
V [auth s]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
W [auth t]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
W [auth t]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
W [auth t]IPR039699Large ribosomal subunit protein uL30Family
W [auth t]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
W [auth t]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
X [auth z]IPR010301Ribosomal RNA processing protein 1Family
Y [auth O]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
Y [auth O]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
Y [auth O]IPR005822Large ribosomal subunit protein uL13Family
Y [auth O]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily