8OH5

Cryo-EM structure of the electron bifurcating transhydrogenase StnABC complex from Sporomusa Ovata (state 2)

External Resource: Annotation

Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (utative)
B	3.40.50.11540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NADH-ubiquinone oxidoreductase 51kDa subunit	CATH (utative)
B	3.10.20.600	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (utative)
B	1.20.1440.230	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	CATH (utative)
E	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (utative)
E	3.40.50.11540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NADH-ubiquinone oxidoreductase 51kDa subunit	CATH (utative)
E	3.10.20.600	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (utative)
E	1.20.1440.230	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	CATH (utative)
H	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (utative)
H	3.40.50.11540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NADH-ubiquinone oxidoreductase 51kDa subunit	CATH (utative)
H	3.10.20.600	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (utative)
H	1.20.1440.230	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	CATH (utative)
K	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (utative)
K	3.40.50.11540	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NADH-ubiquinone oxidoreductase 51kDa subunit	CATH (utative)
K	3.10.20.600	Alpha Beta	Roll	Ubiquitin-like (UB roll)		CATH (utative)
K	1.20.1440.230	Mainly Alpha	Up-down Bundle	de novo design (two linked rop proteins)	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D, G, J	PF01257	Thioredoxin-like [2Fe-2S] ferredoxin (2Fe-2S_thioredx)	Thioredoxin-like [2Fe-2S] ferredoxin	-	Family
B, E, H, K	PF00037	4Fe-4S binding domain (Fer4)	4Fe-4S binding domain	Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich.	Domain
B, E, H, K	PF01512	Nuo51 FMN-binding domain (Complex1_51K)	Nuo51 FMN-binding domain	This entry represents the FMN-binding domain of NADH-ubiquinone oxidoreductase 51kDa subunit from NADH:ubiquinone oxidoreductase.	Domain
B, E, H, K	PF10589	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region (NADH_4Fe-4S)	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region		Domain
C, F, I, L	PF07992	Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox_2)	Pyridine nucleotide-disulphide oxidoreductase	This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.	Domain
C, F, I, L	PF04879	Molybdopterin oxidoreductase Fe4S4 domain (Molybdop_Fe4S4)	Molybdopterin oxidoreductase Fe4S4 domain	This domain is found in formate dehydrogenase H for which the structure is known. This first domain (residues 1 to 60) of PDB:1aa6 is an Fe4S4 cluster just below the protein surface [1].	Domain
C, F, I, L	PF14691	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster (Fer4_20)	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	Domain II of the enzyme dihydroprymidine dehydrogenase binds FAD. Dihydroprymidine dehydrogenase catalyses the first and rate-limiting step of pyrimidine degradation by converting pyrimidines to the corresponding 5,6- dihydro compounds [1]. This doma ...	Domain II of the enzyme dihydroprymidine dehydrogenase binds FAD. Dihydroprymidine dehydrogenase catalyses the first and rate-limiting step of pyrimidine degradation by converting pyrimidines to the corresponding 5,6- dihydro compounds [1]. This domain carries two Fe4-S4 clusters.	Domain
C, F, I, L	PF12838	4Fe-4S dicluster domain (Fer4_7)	4Fe-4S dicluster domain	Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...	Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.	Domain
C, F, I, L	PF00384	Molybdopterin oxidoreductase (Molybdopterin)	Molybdopterin oxidoreductase		Domain
C, F, I, L	PF13510	2Fe-2S iron-sulfur cluster binding domain (Fer2_4)	2Fe-2S iron-sulfur cluster binding domain	The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. Th ...	The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This cluster appears within sarcosine oxidase proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D, G, J	NAD-dependent formate dehydrogenase gamma subunit	oxidoreductase activity catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
B, E, H, K	NAD-reducing hydrogenase subunit HoxF	DNA binding binding nucleic acid binding oxidoreductase activity oxidoreductase activity, acting on hydrogen as donor hydrogen dehydrogenase activity oxidoreductase activity, acting on hydrogen as donor, NAD or NADP as acceptor catalytic activity iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding DNA binding binding nucleic acid binding oxidoreductase activity oxidoreductase activity, acting on hydrogen as donor hydrogen dehydrogenase activity oxidoreductase activity, acting on hydrogen as donor, NAD or NADP as acceptor catalytic activity iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
C, F, I, L	Formate dehydrogenase-O, major subunit	oxidoreductase activity catalytic activity iron-sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D, G, J	IPR028431	NADP-reducing hydrogenase subunit HndA-like	Family
A, D, G, J	IPR042128	NuoE domain	Domain
A, D, G, J	IPR002023	NADH-quinone oxidoreductase subunit E-like	Family
A, D, G, J	IPR041921	NADH-quinone oxidoreductase subunit E, N-terminal	Homologous Superfamily
A, D, G, J	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
B, E, H, K	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
B, E, H, K	IPR019575	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain	Domain
B, E, H, K	IPR037225	NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily	Homologous Superfamily
B, E, H, K	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
B, E, H, K	IPR037207	NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily	Homologous Superfamily
B, E, H, K	IPR011538	NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain	Domain
B, E, H, K	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
C, F, I, L	IPR017900	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Conserved Site
C, F, I, L	IPR006963	Molybdopterin oxidoreductase, 4Fe-4S domain	Domain
C, F, I, L	IPR028261	Dihydroprymidine dehydrogenase domain II	Domain
C, F, I, L	IPR006656	Molybdopterin oxidoreductase	Domain
C, F, I, L	IPR036010	2Fe-2S ferredoxin-like superfamily	Homologous Superfamily
C, F, I, L	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	Domain
C, F, I, L	IPR017896	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Domain
C, F, I, L	IPR023753	FAD/NAD(P)-binding domain	Domain
C, F, I, L	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

8OH5

Cryo-EM structure of the electron bifurcating transhydrogenase StnABC complex from Sporomusa Ovata (state 2)

External Resource: Annotation

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage