Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| N [auth 1S] | Asparaginase_2 | e8t8c1S1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| RB [auth 2S] | Asparaginase_2 | e8t8c2S1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| CC [auth 23] | Asparaginase_2 | e8t8c231 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| Y [auth 13] | Asparaginase_2 | e8t8c131 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| QA [auth 1l] | Asparaginase_2 | e8t8c1l1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| UC [auth 2l] | Asparaginase_2 | e8t8c2l1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| VC [auth 2m] | Asparaginase_2 | e8t8c2m1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| RA [auth 1m] | Asparaginase_2 | e8t8c1m1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| I [auth 1N] | Asparaginase_2 | e8t8c1N1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| MB [auth 2N] | Asparaginase_2 | e8t8c2N1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| H [auth 1I] | Asparaginase_2 | e8t8c1I1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| LB [auth 2I] | Asparaginase_2 | e8t8c2I1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| KB [auth 2H] | Asparaginase_2 | e8t8c2H1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| G [auth 1H] | Asparaginase_2 | e8t8c1H1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| F [auth 1G] | Asparaginase_2 | e8t8c1G1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| JB [auth 2G] | Asparaginase_2 | e8t8c2G1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| AB [auth 1y] | Asparaginase_2 | e8t8c1y1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| ED [auth 2y] | Asparaginase_2 | e8t8c2y1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| YA [auth 1t] | Asparaginase_2 | e8t8c1t1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| CD [auth 2t] | Asparaginase_2 | e8t8c2t1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| XA [auth 1s] | Asparaginase_2 | e8t8c1s1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| BD [auth 2s] | Asparaginase_2 | e8t8c2s1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| E [auth 1F] | Asparaginase_2 | e8t8c1F1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| IB [auth 2F] | Asparaginase_2 | e8t8c2F1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| AD [auth 2r] | Asparaginase_2 | e8t8c2r1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| WA [auth 1r] | Asparaginase_2 | e8t8c1r1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| ZC [auth 2q] | Asparaginase_2 | e8t8c2q1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| VA [auth 1q] | Asparaginase_2 | e8t8c1q1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| UA [auth 1p] | Asparaginase_2 | e8t8c1p1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| YC [auth 2p] | Asparaginase_2 | e8t8c2p1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| TA [auth 1o] | Asparaginase_2 | e8t8c1o1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| XC [auth 2o] | Asparaginase_2 | e8t8c2o1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| SA [auth 1n] | Asparaginase_2 | e8t8c1n1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| WC [auth 2n] | Asparaginase_2 | e8t8c2n1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| PA [auth 1k] | Asparaginase_2 | e8t8c1k1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| TC [auth 2k] | Asparaginase_2 | e8t8c2k1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| OA [auth 1j] | Asparaginase_2 | e8t8c1j1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| SC [auth 2j] | Asparaginase_2 | e8t8c2j1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| NA [auth 1i] | Asparaginase_2 | e8t8c1i1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| RC [auth 2i] | Asparaginase_2 | e8t8c2i1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| D [auth 1E] | Asparaginase_2 | e8t8c1E1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| HB [auth 2E] | Asparaginase_2 | e8t8c2E1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| MA [auth 1h] | Asparaginase_2 | e8t8c1h1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| QC [auth 2h] | Asparaginase_2 | e8t8c2h1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| PC [auth 2g] | Asparaginase_2 | e8t8c2g1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| LA [auth 1g] | Asparaginase_2 | e8t8c1g1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| OC [auth 2f] | Asparaginase_2 | e8t8c2f1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| KA [auth 1f] | Asparaginase_2 | e8t8c1f1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| JA [auth 1e] | Asparaginase_2 | e8t8c1e1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| NC [auth 2e] | Asparaginase_2 | e8t8c2e1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| IA [auth 1d] | Asparaginase_2 | e8t8c1d1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| MC [auth 2d] | Asparaginase_2 | e8t8c2d1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| LC [auth 2c] | Asparaginase_2 | e8t8c2c1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| HA [auth 1c] | Asparaginase_2 | e8t8c1c1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| KC [auth 2b] | Asparaginase_2 | e8t8c2b1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| GA [auth 1b] | Asparaginase_2 | e8t8c1b1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| EA [auth 19] | Asparaginase_2 | e8t8c191 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| IC [auth 29] | Asparaginase_2 | e8t8c291 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| HC [auth 28] | Asparaginase_2 | e8t8c281 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| DA [auth 18] | Asparaginase_2 | e8t8c181 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| GB [auth 2D] | Asparaginase_2 | e8t8c2D1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| C [auth 1D] | Asparaginase_2 | e8t8c1D1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| CA [auth 17] | Asparaginase_2 | e8t8c171 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| GC [auth 27] | Asparaginase_2 | e8t8c271 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| BA [auth 16] | Asparaginase_2 | e8t8c161 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| FC [auth 26] | Asparaginase_2 | e8t8c261 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| EC [auth 25] | Asparaginase_2 | e8t8c251 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| AA [auth 15] | Asparaginase_2 | e8t8c151 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| DC [auth 24] | Asparaginase_2 | e8t8c241 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| Z [auth 14] | Asparaginase_2 | e8t8c141 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| X [auth 12] | Asparaginase_2 | e8t8c121 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| BC [auth 22] | Asparaginase_2 | e8t8c221 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| W [auth 11] | Asparaginase_2 | e8t8c111 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| AC [auth 21] | Asparaginase_2 | e8t8c211 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| V [auth 10] | Asparaginase_2 | e8t8c101 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| ZB [auth 20] | Asparaginase_2 | e8t8c201 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| YB [auth 2Z] | Asparaginase_2 | e8t8c2Z1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| U [auth 1Z] | Asparaginase_2 | e8t8c1Z1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| XB [auth 2Y] | Asparaginase_2 | e8t8c2Y1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| T [auth 1Y] | Asparaginase_2 | e8t8c1Y1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| WB [auth 2X] | Asparaginase_2 | e8t8c2X1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| S [auth 1X] | Asparaginase_2 | e8t8c1X1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| R [auth 1W] | Asparaginase_2 | e8t8c1W1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| VB [auth 2W] | Asparaginase_2 | e8t8c2W1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| Q [auth 1V] | Asparaginase_2 | e8t8c1V1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| UB [auth 2V] | Asparaginase_2 | e8t8c2V1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| P [auth 1U] | Asparaginase_2 | e8t8c1U1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| TB [auth 2U] | Asparaginase_2 | e8t8c2U1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| SB [auth 2T] | Asparaginase_2 | e8t8c2T1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| O [auth 1T] | Asparaginase_2 | e8t8c1T1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| M [auth 1R] | Asparaginase_2 | e8t8c1R1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| QB [auth 2R] | Asparaginase_2 | e8t8c2R1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| PB [auth 2Q] | Asparaginase_2 | e8t8c2Q1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| L [auth 1Q] | Asparaginase_2 | e8t8c1Q1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| K [auth 1P] | Asparaginase_2 | e8t8c1P1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| OB [auth 2P] | Asparaginase_2 | e8t8c2P1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| J [auth 1O] | Asparaginase_2 | e8t8c1O1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
| NB [auth 2O] | Asparaginase_2 | e8t8c2O1 | A: alpha arrays | X: RNase A-like | H: RNase A-like | T: RNase A-like | F: Asparaginase_2 | ECOD (v295.2) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| A [auth 1A], EB [auth 2A] | 2MA | Parent Component: A |
| A [auth 1A], EB [auth 2A] | 2MU | Parent Component: U |
| A [auth 1A], EB [auth 2A] | 5MC | Parent Component: C |
| A [auth 1A], EB [auth 2A] | 5MU | Parent Component: U |
| A [auth 1A], EB [auth 2A] | OMC | Parent Component: C |
| A [auth 1A], EB [auth 2A] | OMG | Parent Component: G |
| A [auth 1A], EB [auth 2A] | PSU | Parent Component: U |
| QA [auth 1l], UC [auth 2l] | 0TD | Parent Component: ASP |
| DB [auth 1v], HD [auth 2v] | FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| CB [auth 1x], GD [auth 2x] | 8AN | Parent Component: A :  AA0021 , AA0566 |
| BB [auth 1w], FD [auth 2w] | PPU | Parent Component: A :  AA0021 , AA0566 |
| FA [auth 1a], JC [auth 2a] | 2MG | Parent Component: G :  AA0021 , AA0566 |
| FA [auth 1a], JC [auth 2a] | 4OC | Parent Component: C :  AA0021 , AA0566 |
| FA [auth 1a], JC [auth 2a] | 5MC | Parent Component: C :  AA0021 , AA0566 |
| FA [auth 1a], JC [auth 2a] | G7M | Parent Component: G :  AA0021 , AA0566 |
| FA [auth 1a], JC [auth 2a] | M2G | Parent Component: G :  AA0021 , AA0566 |
| FA [auth 1a], JC [auth 2a] | MA6 | Parent Component: A :  AA0021 , AA0566 |
| FA [auth 1a], JC [auth 2a] | PSU | Parent Component: U :  AA0021 , AA0566 |
| FA [auth 1a], JC [auth 2a] | UR3 | Parent Component: U :  AA0021 , AA0566 |