Annotations: 8ZJW

Cryo-EM structure of photosynthetic LH1' complex of Roseospirillum parvum

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth h]	Fe_hyd_SSU	e8zjwh1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
W [auth f]	Fe_hyd_SSU	e8zjwf1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
U [auth d]	Fe_hyd_SSU	e8zjwd1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
S [auth b]	Fe_hyd_SSU	e8zjwb1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
P [auth V]	Fe_hyd_SSU	e8zjwV1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
N [auth T]	Fe_hyd_SSU	e8zjwT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
L [auth R]	Fe_hyd_SSU	e8zjwR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
J [auth N]	Fe_hyd_SSU	e8zjwN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
H [auth J]	Fe_hyd_SSU	e8zjwJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
F [auth G]	Fe_hyd_SSU	e8zjwG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
D [auth E]	Fe_hyd_SSU	e8zjwE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
BA [auth C]	Fe_hyd_SSU	e8zjwC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
B [auth A]	GFO_IDH_MocA	e8zjwA01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: GFO_IDH_MocA	ECOD (v295.2)
AA [auth j]	Fe_hyd_SSU	e8zjwj1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
Z [auth i]	Fe_hyd_SSU	e8zjwi1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
X [auth g]	Fe_hyd_SSU	e8zjwg1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
V [auth e]	Fe_hyd_SSU	e8zjwe1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
T [auth c]	Fe_hyd_SSU	e8zjwc1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
R [auth a]	Fe_hyd_SSU	e8zjwa1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
Q [auth Y]	Fe_hyd_SSU	e8zjwY1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
O [auth U]	Fe_hyd_SSU	e8zjwU1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
M [auth S]	Fe_hyd_SSU	e8zjwS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
K [auth Q]	Fe_hyd_SSU	e8zjwQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
I [auth K]	Fe_hyd_SSU	e8zjwK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
G [auth I]	Fe_hyd_SSU	e8zjwI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
E [auth F]	Fe_hyd_SSU	e8zjwF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
C [auth D]	Fe_hyd_SSU	e8zjwD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Fe_hyd_SSU	ECOD (v295.2)
A [auth B]	GFO_IDH_MocA	e8zjwB01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: GFO_IDH_MocA	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	PF00556	Antenna complex alpha/beta subunit (LHC)	Antenna complex alpha/beta subunit		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	Alpha subunit of light-harvesting 1 complex	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle membrane-bounded organelle intracellular organelle organelle envelope organelle inner membrane cellular anatomical structure intracellular anatomical structure organelle membrane organelle membrane cell periphery plasma membrane plasma membrane light-harvesting complex protein-containing complex intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle cytoplasmic vesicle cytoplasm vesicle
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	Beta subunit of light-harvesting 1 complex	-	photosynthesis photosynthesis, light reaction metabolic process cellular process generation of precursor metabolites and energy	cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle cell periphery cellular anatomical structure plasma membrane membrane membrane-bounded organelle plasma membrane light-harvesting complex protein-containing complex intracellular anatomical structure intracellular vesicle plasma membrane-derived chromatophore light-harvesting complex intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	IPR000066	Antenna complex, alpha/beta subunit	Domain
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	IPR018332	Antenna complex, alpha subunit	Family
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	IPR002361	Antenna complex, alpha subunit conserved site	Conserved Site
AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], AA [auth j], B [auth A], BA [auth C], D [auth E], F [auth G], H [auth J], J [auth N], L [auth R], N [auth T], P [auth V], S [auth b], U [auth d], W [auth f], Y [auth h]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	IPR000066	Antenna complex, alpha/beta subunit	Domain
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	IPR023624	Antenna complex, beta domain superfamily	Homologous Superfamily
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	IPR035889	Light-harvesting complex	Homologous Superfamily
A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], A [auth B], C [auth D], E [auth F], G [auth I], I [auth K], K [auth Q], M [auth S], O [auth U], Q [auth Y], R [auth a], T [auth c], V [auth e], X [auth g], Z [auth i]	IPR002362	Light-harvesting protein B beta chain	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth B], AA [auth j], B [auth A], BA [auth C], C [auth D] A [auth B], AA [auth j], B [auth A], BA [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth I], H [auth J], I [auth K], J [auth N], K [auth Q], L [auth R], M [auth S], N [auth T], O [auth U], P [auth V], Q [auth Y], R [auth a], S [auth b], T [auth c], U [auth d], V [auth e], W [auth f], X [auth g], Y [auth h], Z [auth i]	PDBTM	Annotated as membrane protein by PDBTM