Annotations: 9ASH

Cryo-EM structure of the active Lactococcus lactis Csm bound to target in post-cleavage stage

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth I]	SCOP2B Superfamily	CRISPR-associated proteins	8106216	3001554	SCOP2B (2022-06-29)
E [auth G]	SCOP2B Superfamily	CRISPR-associated proteins	8106216	3001554	SCOP2B (2022-06-29)
D [auth H]	SCOP2B Superfamily	CRISPR-associated proteins	8106216	3001554	SCOP2B (2022-06-29)
C [auth F]	SCOP2B Superfamily	CRISPR-associated proteins	8106216	3001554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L [auth J]	GFO_IDH_MocA	e9ashJ01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: GFO_IDH_MocA	ECOD (v295.2)
K [auth C]	Reovirus_L2_GTase	e9ashC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)
I [auth E]	Reovirus_L2_GTase	e9ashE1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)
H [auth D]	GFO_IDH_MocA	e9ashD01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: GFO_IDH_MocA	ECOD (v295.2)
F [auth I]	Reovirus_L2_GTase	e9ashI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)
E [auth G]	Reovirus_L2_GTase	e9ashG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)
D [auth H]	Reovirus_L2_GTase	e9ashH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)
C [auth F]	GFO_IDH_MocA	e9ashF01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: GFO_IDH_MocA	ECOD (v295.2)
B	Reovirus_L2_GTase	e9ashB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Reovirus_L2_GTase	ECOD (v295.2)
A	GFO_IDH_MocA	e9ashA02	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: GFO_IDH_MocA	ECOD (v295.2)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
L [auth J]	IPR005537	CRISPR type III-associated protein	Domain
L [auth J]	IPR010173	CRISPR-associated protein Csm5	Family
H [auth D], I [auth E], K [auth C]	IPR010149	CRISPR-associated protein, Csm2 Type III-A	Family
C [auth F], D [auth H], E [auth G], F [auth I]	IPR052216	CRISPR_Csm3_endoribonuclease	Unknown
C [auth F], D [auth H], E [auth G], F [auth I]	IPR013412	CRISPR-associated RAMP Csm3	Family
C [auth F], D [auth H], E [auth G], F [auth I]	IPR005537	CRISPR type III-associated protein	Domain
B	IPR005537	CRISPR type III-associated protein	Domain
B	IPR005510	CRISPR type III-associated RAMP protein Csm4	Family
B	IPR040932	Csm4, C-terminal	Domain
A	IPR000160	GGDEF domain	Domain
A	IPR013408	CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1	Family
A	IPR048693	CRISPR RNA silencing complex Cmr2-like, C-terminal domain	Domain
A	IPR052117	CRISPR-associated Cas10/Csm1 subtype III-A protein	Family
A	IPR041062	Csm1, subunit domain B	Domain
A	IPR054767	Cas10/Cmr2, second palm domain	Domain
A	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	Homologous Superfamily
A	IPR006674	HD domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9ASH | pdb_00009ash

Cryo-EM structure of the active Lactococcus lactis Csm bound to target in post-cleavage stage

External Resource: Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage