9BDT

Apolipoprotein B 100 bound to LDL receptor and legobody


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth B]SCOP2B SuperfamilyType 2 solute binding protein-like 8058187 3000083 SCOP2B (2022-06-29)
G [auth R]SCOP2B SuperfamilyLDL receptor-like module 8043873 3000728 SCOP2B (2022-06-29)
G [auth R]SCOP2B SuperfamilyEGF/Laminin-like 8056609 3000412 SCOP2B (2022-06-29)
E [auth I]SCOP2B SuperfamilyYWTD domain-like 8034029 3000494 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF09172Vitellinogen, open beta-sheet (Vit_open_b-sht)Vitellinogen, open beta-sheetThis entry represents the open beta-sheet domain found in vitellinogen, which generally corresponds to a domain within the lipovitellin-1 peptide product. This domain adopts a structure consisting of several large open beta-sheets [1]. Domain
PF12491Apolipoprotein B100 C terminal (ApoB100_C)Apolipoprotein B100 C terminal- Family
PF01347Lipoprotein amino terminal region (Vitellogenin_N)Lipoprotein amino terminal region- Repeat
PF06448Domain of Unknown Function (DUF1081) (DUF1081)Domain of Unknown Function (DUF1081)- Family
D [auth B]PF01547Bacterial extracellular solute-binding protein (SBP_bac_1)Bacterial extracellular solute-binding protein- Family
D [auth B]PF02216B domain (B)B domainThis family contains the B domain of Staphylococcal protein A, which specifically binds to the Fc portion of immunoglobulin G. Domain
E [auth I],
G [auth R]
PF00057Low-density lipoprotein receptor domain class A (Ldl_recept_a)Low-density lipoprotein receptor domain class A- Repeat
E [auth I],
G [auth R]
PF00058Low-density lipoprotein receptor repeat class B (Ldl_recept_b)Low-density lipoprotein receptor repeat class B- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Apolipoprotein B-100
B [auth H]Legobody 8D3 Fab Heavy Chain---
C [auth L]Legobody 8D3 Fab Light Chain---
D [auth B]Maltodextrin-binding protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G
E [auth I],
G [auth R]
Low-density lipoprotein receptor
F [auth N]ApoB100 nanobody 4---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR016024Armadillo-type foldHomologous Superfamily
IPR015255Vitellinogen, open beta-sheetDomain
IPR015819Lipid transport protein, beta-sheet shellHomologous Superfamily
IPR022176Apolipoprotein B100 C-terminalDomain
IPR052418Apolipoprotein BFamily
IPR011030Lipovitellin-phosvitin complex, superhelical domainHomologous Superfamily
IPR015816Vitellinogen, beta-sheet N-terminalHomologous Superfamily
IPR001747Vitellogenin, N-terminalDomain
IPR009454Lipid transport, open beta-sheetDomain
IPR015817Vitellinogen, open beta-sheet, subdomain 1Homologous Superfamily
D [auth B]IPR006061Solute-binding family 1, conserved siteConserved Site
D [auth B]IPR006060Maltose/Cyclodextrin ABC transporter, substrate-binding proteinFamily
D [auth B]IPR006059Bacterial-type extracellular solute-binding proteinFamily
D [auth B]IPR009063Immunoglobulin/albumin-binding domain superfamilyHomologous Superfamily
D [auth B]IPR005877YSIRK Gram-positive signal peptideDomain
D [auth B]IPR036779LysM domain superfamilyHomologous Superfamily
D [auth B]IPR005038Octapeptide repeatRepeat
D [auth B]IPR003132Protein A, Ig-binding domainDomain
D [auth B]IPR018392LysM domainDomain
D [auth B]IPR019931LPXTG cell wall anchor domainDomain
D [auth B]IPR009063Immunoglobulin/albumin-binding domain superfamilyHomologous Superfamily
D [auth B]IPR019950M protein-type anchor domainDomain
D [auth B]IPR005877YSIRK Gram-positive signal peptideDomain
D [auth B]IPR000724IgG-binding BDomain
D [auth B]IPR035152GA-like domainDomain
D [auth B]IPR019931LPXTG cell wall anchor domainDomain
E [auth I],
G [auth R]
IPR018097EGF-like calcium-binding, conserved siteConserved Site
E [auth I],
G [auth R]
IPR036055LDL receptor-like superfamilyHomologous Superfamily
E [auth I],
G [auth R]
IPR049883NOTCH1 EGF-like calcium-binding domainDomain
E [auth I],
G [auth R]
IPR000033LDLR class B repeatRepeat
E [auth I],
G [auth R]
IPR001881EGF-like calcium-binding domainDomain
E [auth I],
G [auth R]
IPR023415Low-density lipoprotein (LDL) receptor class A, conserved siteConserved Site
E [auth I],
G [auth R]
IPR011042Six-bladed beta-propeller, TolB-likeHomologous Superfamily
E [auth I],
G [auth R]
IPR002172Low-density lipoprotein (LDL) receptor class A repeatRepeat
E [auth I],
G [auth R]
IPR000742EGF-like domainDomain
E [auth I],
G [auth R]
IPR051221Low-density lipoprotein receptor-relatedFamily
E [auth I],
G [auth R]
IPR009030Growth factor receptor cysteine-rich domain superfamilyHomologous Superfamily
E [auth I],
G [auth R]
IPR000152EGF-type aspartate/asparagine hydroxylation sitePTM

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP04114
E [auth I],
G [auth R]
PharosP01130