P400 subcomplex of the native human TIP60 complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| J [auth K] | SCOP2B Superfamily | YL1-Z domain-like | 8093147 | 3002684 | SCOP2B (2022-06-29) |
| M [auth N] | SCOP2B Superfamily | Core histone-like | 8036779 | 3001387 | SCOP2B (2022-06-29) |
| N [auth O] | SCOP2B Superfamily | Core histone-like | 8066269 | 3001387 | SCOP2B (2022-06-29) |
| H [auth I] | SCOP2B Superfamily | Homeodomain-like | 8089897 | 3000001 | SCOP2B (2022-06-29) |
| A [auth B] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8039200 | 3000135 | SCOP2B (2022-06-29) |
| C [auth D] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8039200 | 3000135 | SCOP2B (2022-06-29) |
| E [auth F] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8039200 | 3000135 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth J] | WD40 | e9c62J1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| K [auth L] | WD40 | e9c62L1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| O [auth M] | WD40 | e9c62M1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| M [auth N] | WD40 | e9c62N1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| N [auth O] | WD40 | e9c62O1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| B [auth C] | WD40 | e9c62C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| D [auth E] | WD40 | e9c62E1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| L [auth A] | WD40 | e9c62A1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| A [auth B] | WD40 | e9c62B1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| C [auth D] | WD40 | e9c62D1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
| E [auth F] | WD40 | e9c62F1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: WD40 | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| F [auth G] | PF00271 | Helicase conserved C-terminal domain (Helicase_C) | Helicase conserved C-terminal domain | The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. | Domain |
| F [auth G] | PF00176 | SNF2-related domain (SNF2-rel_dom) | SNF2-related domain | This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as w ... | Domain |
| F [auth G] | PF07529 | HSA domain (HSA) | HSA domain | - | Family |
| J [auth K] | PF08265 | YL1 nuclear protein C-terminal domain (YL1_C) | YL1 nuclear protein C-terminal domain | This domain is found in proteins of the YL1 family [1]. These proteins have been shown to be DNA-binding and may be a transcription factor [1]. This domain is found in proteins that are not YL1 proteins. | Domain |
| K [auth L], O [auth M] | PF00022 | Actin (Actin) | Actin | - | Family |
| M [auth N] | PF16211 | C-terminus of histone H2A (Histone_H2A_C) | C-terminus of histone H2A | - | Family |
| H [auth I] | PF16282 | SANT/Myb-like domain of DAMP1 (SANT_DAMP1_like) | SANT/Myb-like domain of DAMP1 | This domain, approximately 90 residues, is mainly found in DNA methyltransferase 1-associated protein 1 (DAMP1) that plays an important role in development and maintenace of genome integrity in various mammalia species [2,3]. It mainly consists of ta ... | Domain |
| H [auth I] | PF05499 | DNA methyltransferase 1-associated protein 1 (DMAP1) (DMAP1) | DNA methyltransferase 1-associated protein 1 (DMAP1) | - | Family |
| B [auth C], D [auth E], L [auth A] | PF06068 | TIP49 P-loop domain (TIP49) | TIP49 P-loop domain | This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ... | Domain |
| B [auth C], D [auth E], L [auth A] | PF17856 | TIP49 AAA-lid domain (TIP49_C) | TIP49 AAA-lid domain | This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ... | Domain |
| A [auth B], C [auth D], E [auth F] | PF06068 | TIP49 P-loop domain (TIP49) | TIP49 P-loop domain | This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ... | Domain |
| A [auth B], C [auth D], E [auth F] | PF17856 | TIP49 AAA-lid domain (TIP49_C) | TIP49 AAA-lid domain | This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the Pfam:PF00004 domain. In zebrafish, the liebeskummer (lik) ... | Domain |














