9CBC | pdb_00009cbc

Yersinia entomophaga holotoxin complex in pore conformation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Effector protein SpvB, N-terminal domain-like	8102233	3002724	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	PAL-like	8102242	3002726	SCOP2B (2022-06-29)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D, G, J, M	Toxin subunit YenA1	-	-	cellular anatomical structure extracellular region
B, E, H, K, N	Toxin subunit YenA2	-	-	cellular anatomical structure extracellular region
C, F, I, L, O	Chitinase 2	chitin binding binding carbohydrate derivative binding chitinase activity hydrolase activity, acting on glycosyl bonds hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity endochitinase activity	carbohydrate derivative catabolic process catabolic process carbohydrate derivative metabolic process chitin metabolic process aminoglycan catabolic process macromolecule catabolic process glucosamine-containing compound catabolic process amino sugar catabolic process aminoglycan metabolic process amino sugar metabolic process metabolic process cellular process macromolecule metabolic process chitin catabolic process carbohydrate derivative catabolic process catabolic process carbohydrate derivative metabolic process chitin metabolic process aminoglycan catabolic process macromolecule catabolic process glucosamine-containing compound catabolic process amino sugar catabolic process aminoglycan metabolic process amino sugar metabolic process metabolic process cellular process macromolecule metabolic process chitin catabolic process carbohydrate metabolic process polysaccharide metabolic process polysaccharide catabolic process carbohydrate catabolic process primary metabolic process	cellular anatomical structure extracellular region
P	Toxin subunit YenB	-	-	cellular anatomical structure intracellular anatomical structure cytoplasm extracellular region
Q	Toxin subunit YenC2	-	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D, G, J, M	IPR018003	Insecticidal toxin complex/plasmid virulence protein	Family
B, E, H, K, N	IPR041079	Neuraminidase-like domain	Domain
B, E, H, K, N	IPR040840	Tc toxin complex TcA, C-terminal TcB-binding domain	Domain
B, E, H, K, N	IPR046839	ABC toxin, N-terminal domain	Domain
C, F, I, L, O	IPR011583	Chitinase II/V-like, catalytic domain	Domain
C, F, I, L, O	IPR029070	Chitinase insertion domain superfamily	Homologous Superfamily
C, F, I, L, O	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
C, F, I, L, O	IPR050314	Glycosyl Hydrolase Family 18	Family
C, F, I, L, O	IPR001223	Glycoside hydrolase family 18, catalytic domain	Domain
P	IPR028994	Integrin alpha, N-terminal	Homologous Superfamily
P	IPR003284	Salmonella virulence plasmid 65kDa B protein	Family
P	IPR022044	Insecticide toxin TcdB middle/C-terminal	Domain
P	IPR022045	Insecticide toxin TcdB middle/N-terminal	Domain
Q	IPR050708	Type VI secretion system VgrG/RHS	Family
Q	IPR041508	Toxin complex C-like repeat	Repeat
Q	IPR022385	Rhs repeat-associated core	Domain
Q	IPR025968	YwqJ-like deaminase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.