9DC2 | pdb_00009dc2

Adeno-associated virus 8 capsid

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth z]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
YA [auth y]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
XA [auth x]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
WA [auth w]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
VA [auth v]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
UA [auth u]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
TA [auth t]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
SA [auth s]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
RA [auth r]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
QA [auth q]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
PA [auth p]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
MA [auth m]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
HB [auth 8]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
GB [auth 7]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
FB [auth 6]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
EB [auth 5]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
DB [auth 4]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
CB [auth 3]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
BB [auth 2]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
AB [auth 1]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth z]	WD40	e9dc2z1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Z	WD40	e9dc2Z1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
YA [auth y]	WD40	e9dc2y1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Y	WD40	e9dc2Y1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
XA [auth x]	WD40	e9dc2x1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
X	WD40	e9dc2X1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
WA [auth w]	WD40	e9dc2w1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
W	WD40	e9dc2W1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
VA [auth v]	WD40	e9dc2v1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
V	WD40	e9dc2V1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
UA [auth u]	WD40	e9dc2u1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
U	WD40	e9dc2U1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
TA [auth t]	WD40	e9dc2t1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T	WD40	e9dc2T1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
SA [auth s]	WD40	e9dc2s1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S	WD40	e9dc2S1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
RA [auth r]	WD40	e9dc2r1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R	WD40	e9dc2R1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
QA [auth q]	WD40	e9dc2q1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Q	WD40	e9dc2Q1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
PA [auth p]	WD40	e9dc2p1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P	WD40	e9dc2P1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
OA [auth o]	WD40	e9dc2o1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O	WD40	e9dc2O1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NA [auth n]	WD40	e9dc2n1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N	WD40	e9dc2N1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MA [auth m]	WD40	e9dc2m1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M	WD40	e9dc2M1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LA [auth l]	WD40	e9dc2l1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L	WD40	e9dc2L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KA [auth k]	WD40	e9dc2k1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K	WD40	e9dc2K1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JA [auth j]	WD40	e9dc2j1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J	WD40	e9dc2J1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IA [auth i]	WD40	e9dc2i1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I	WD40	e9dc2I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HB [auth 8]	WD40	e9dc281	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HA [auth h]	WD40	e9dc2h1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H	WD40	e9dc2H1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GB [auth 7]	WD40	e9dc271	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GA [auth g]	WD40	e9dc2g1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G	WD40	e9dc2G1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FB [auth 6]	WD40	e9dc261	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FA [auth f]	WD40	e9dc2f1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F	WD40	e9dc2F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EB [auth 5]	WD40	e9dc251	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EA [auth e]	WD40	e9dc2e1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E	WD40	e9dc2E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DB [auth 4]	WD40	e9dc241	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DA [auth d]	WD40	e9dc2d1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D	WD40	e9dc2D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CB [auth 3]	WD40	e9dc231	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CA [auth c]	WD40	e9dc2c1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C	WD40	e9dc2C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BB [auth 2]	WD40	e9dc221	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BA [auth b]	WD40	e9dc2b1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B	WD40	e9dc2B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AB [auth 1]	WD40	e9dc211	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AA [auth a]	WD40	e9dc2a1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A	VWA	e9dc2A01	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: VWA	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Capsid protein	structural molecule activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.