9ITY | pdb_00009ity

Chloroflexus aurantiacus ADP-bound ATP synthase, state 2, focused refinement of FO and peripheral stalk

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P [auth T]	Beta-Casp	e9ityT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
O [auth Z]	Beta-Casp	e9ityZ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
N [auth Q]	Beta-Casp	e9ityQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
M [auth P]	Beta-Casp	e9ityP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
L [auth O]	Beta-Casp	e9ityO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
K [auth N]	Beta-Casp	e9ityN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
J [auth M]	Beta-Casp	e9ityM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
I [auth L]	Beta-Casp	e9ityL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
H [auth K]	Beta-Casp	e9ityK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
G [auth J]	Beta-Casp	e9ityJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
F [auth I]	Beta-Casp	e9ityI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
E [auth H]	Beta-Casp	e9ityH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
D [auth U]	Beta-Casp	e9ityU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
C [auth X]	Beta-Casp	e9ityX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
B [auth V]	Beta-Casp	e9ityV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
A [auth Y]	Beta-Casp	e9ityY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
O [auth Z], P [auth T]	PF00119	ATP synthase A chain (ATP-synt_A)	ATP synthase A chain		Domain
E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], J [auth M], K [auth N], L [auth O], M [auth P], N [auth Q]	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
A [auth Y], B [auth V], C [auth X], D [auth U]	PF00430	ATP synthase B/B' CF(0) (ATP-synt_B)	ATP synthase B/B' CF(0)	-	Coiled-coil

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
O [auth Z], P [auth T]	ATP synthase subunit a	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process small molecule metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process purine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process proton motive force-driven plasma membrane ATP synthesis primary metabolic process nucleotide metabolic process nucleobase-containing compound biosynthetic process ribonucleoside triphosphate biosynthetic process purine-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process cellular process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process	cell periphery cellular anatomical structure plasma membrane membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex
E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], J [auth M], K [auth N], L [auth O], M [auth P], N [auth Q]	ATP synthase subunit c	binding lipid binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity binding lipid binding monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process ribose phosphate metabolic process ATP metabolic process ATP biosynthetic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process purine ribonucleoside triphosphate biosynthetic process proton motive force-driven ATP synthesis nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process purine nucleoside triphosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process purine ribonucleoside triphosphate metabolic process small molecule metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process purine nucleoside triphosphate metabolic process nucleoside triphosphate biosynthetic process primary metabolic process nucleotide metabolic process nucleobase-containing compound biosynthetic process ribonucleoside triphosphate biosynthetic process purine-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process cellular process nucleoside triphosphate metabolic process purine ribonucleotide metabolic process purine nucleotide biosynthetic process	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex proton-transporting two-sector ATPase complex membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex proton-transporting two-sector ATPase complex membrane protein complex proton-transporting two-sector ATPase complex, proton-transporting domain respiratory chain complex catalytic complex proton-transporting ATP synthase complex cation channel complex transporter complex transmembrane transporter complex monoatomic ion channel complex
A [auth Y], B [auth V], C [auth X], D [auth U]	ATP synthase subunit b	monoatomic cation transmembrane transporter activity proton transmembrane transporter activity monoatomic ion channel activity proton channel activity proton-transporting ATP synthase activity, rotational mechanism monoatomic cation channel activity passive transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity catalytic activity ligase activity	-	cell periphery cellular anatomical structure plasma membrane membrane respiratory chain complex protein-containing complex catalytic complex proton-transporting ATP synthase complex membrane protein complex cation channel complex transporter complex proton-transporting two-sector ATPase complex transmembrane transporter complex monoatomic ion channel complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
O [auth Z], P [auth T]	IPR023011	ATP synthase, F0 complex, subunit A, active site	Active Site
O [auth Z], P [auth T]	IPR000568	ATP synthase, F0 complex, subunit A	Family
O [auth Z], P [auth T]	IPR035908	ATP synthase, F0 complex, subunit A superfamily	Homologous Superfamily
O [auth Z], P [auth T]	IPR045082	ATP synthase, F0 complex, subunit A, bacterial/chloroplast	Family
E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], J [auth M], K [auth N], L [auth O], M [auth P], N [auth Q]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], J [auth M], K [auth N], L [auth O], M [auth P], N [auth Q]	IPR005953	ATP synthase, F0 complex, subunit C, bacterial/chloroplast	Family
E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], J [auth M], K [auth N], L [auth O], M [auth P], N [auth Q]	IPR038662	F1F0 ATP synthase subunit C superfamily	Homologous Superfamily
E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], J [auth M], K [auth N], L [auth O], M [auth P], N [auth Q]	IPR020537	ATP synthase, F0 complex, subunit C, DCCD-binding site	Binding Site
E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], J [auth M], K [auth N], L [auth O], M [auth P], N [auth Q]	IPR000454	ATP synthase, F0 complex, subunit C	Family
E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], E [auth H], F [auth I], G [auth J], H [auth K], I [auth L], J [auth M], K [auth N], L [auth O], M [auth P], N [auth Q]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
A [auth Y], B [auth V], C [auth X], D [auth U]	IPR002146	ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast	Family
A [auth Y], B [auth V], C [auth X], D [auth U]	IPR005864	ATP synthase, F0 complex, subunit b, bacterial	Family
A [auth Y], B [auth V], C [auth X], D [auth U]	IPR050059	ATP synthase B chain	Family
A [auth Y], B [auth V], C [auth X], D [auth U]	IPR028987	F-type ATP synthase subunit B-like, membrane domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.