Annotations: 9NSP

MPXV replisome bound to ssDNA

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth A]	PF08452	DNA polymerase family B exonuclease domain, N-terminal (DNAP_B_exo_N)	DNA polymerase family B exonuclease domain, N-terminal	-	Family
C [auth A]	PF08408	DNA polymerase family B viral insert (DNA_pol_B_3)	DNA polymerase family B viral insert	-	Family
C [auth A]	PF03104	DNA polymerase family B, exonuclease domain (DNA_pol_B_exo1)	DNA polymerase family B, exonuclease domain	-	Family
C [auth A]	PF00136	DNA polymerase family B (DNA_pol_B)	DNA polymerase family B	-	Family
A [auth D], B [auth E], G [auth I], H, I [auth J], A [auth D], B [auth E], G [auth I], H, I [auth J], J [auth K]	PF08706	D5 N terminal like (D5_N)	D5 N terminal like	This domain is found in D5 proteins of DNA viruses and bacteriophage P4 DNA primases phages.	Domain
A [auth D], B [auth E], G [auth I], H, I [auth J], A [auth D], B [auth E], G [auth I], H, I [auth J], J [auth K]	PF03288	Poxvirus D5 protein-like (Pox_D5)	Poxvirus D5 protein-like	This family includes D5 from Poxviruses which is necessary for viral DNA replication, and is a nucleic acid independent nucleoside triphosphatase. Members of this family are also found outside of poxviruses. This domain is a DNA-binding winged HTH do ...	This family includes D5 from Poxviruses which is necessary for viral DNA replication, and is a nucleic acid independent nucleoside triphosphatase. Members of this family are also found outside of poxviruses. This domain is a DNA-binding winged HTH domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
F [auth T]	DNA (5'-D(PTPTPTPTPTPTPTPTPTPTPTPTP*T)-3')	-	-	-
E [auth B]	Uracil-DNA glycosylase	DNA binding binding nucleic acid binding uracil DNA N-glycosylase activity hydrolase activity, acting on glycosyl bonds deaminated base DNA N-glycosylase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid hydrolase activity DNA N-glycosylase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair	-
D [auth C]	DNA polymerase processivity factor component OPG148	-	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	-
C [auth A]	DNA polymerase	catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding nucleic acid binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding catalytic activity, acting on DNA DNA-directed DNA polymerase activity DNA polymerase activity catalytic activity, acting on a nucleic acid transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups DNA binding binding nucleic acid binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding hydrolase activity	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process viral DNA genome replication viral life cycle nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid biosynthetic process biosynthetic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process viral DNA genome replication viral life cycle nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid biosynthetic process biosynthetic process viral genome replication viral process DNA biosynthetic process DNA recombination	-
A [auth D], B [auth E], G [auth I], H, I [auth J], A [auth D], B [auth E], G [auth I], H, I [auth J], J [auth K]	Uncoating factor OPG117	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on a nucleic acid helicase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity hydrolase activity	-	host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth B]	IPR018085	Uracil-DNA glycosylase, active site	Active Site
E [auth B]	IPR036895	Uracil-DNA glycosylase-like domain superfamily	Homologous Superfamily
D [auth C]	IPR010267	Chordopoxvirus A20R	Family
C [auth A]	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
C [auth A]	IPR006134	DNA-directed DNA polymerase, family B, multifunctional domain	Domain
C [auth A]	IPR006172	DNA-directed DNA polymerase, family B	Family
C [auth A]	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
C [auth A]	IPR006133	DNA-directed DNA polymerase, family B, exonuclease domain	Domain
C [auth A]	IPR050240	DNA polymerase type-B	Family
C [auth A]	IPR013660	DNA polymerase B exonuclease, N-terminal	Domain
C [auth A]	IPR017964	DNA-directed DNA polymerase, family B, conserved site	Conserved Site
C [auth A]	IPR013617	DNA-directed DNA polymerase, family B, viral insert domain	Domain
C [auth A]	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily
C [auth A]	IPR023211	DNA polymerase, palm domain superfamily	Homologous Superfamily
A [auth D], B [auth E], G [auth I], H, I [auth J], A [auth D], B [auth E], G [auth I], H, I [auth J], J [auth K]	IPR014015	Helicase, superfamily 3, DNA virus	Domain
A [auth D], B [auth E], G [auth I], H, I [auth J], A [auth D], B [auth E], G [auth I], H, I [auth J], J [auth K]	IPR014818	Bacteriophage/plasmid primase, P4, C-terminal	Domain
A [auth D], B [auth E], G [auth I], H, I [auth J], A [auth D], B [auth E], G [auth I], H, I [auth J], J [auth K]	IPR004968	DNA primase/nucleoside triphosphatase, C-terminal	Domain
A [auth D], B [auth E], G [auth I], H, I [auth J], A [auth D], B [auth E], G [auth I], H, I [auth J], J [auth K]	IPR051620	ORF904-like, C-terminal domain	Domain
A [auth D], B [auth E], G [auth I], H, I [auth J], A [auth D], B [auth E], G [auth I], H, I [auth J], J [auth K]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9NSP | pdb_00009nsp

MPXV replisome bound to ssDNA

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage