9P3N | pdb_00009p3n

The open state of zebrafish TRPM5 with 1mM EDTA and 0.5mM CBTA

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth C]	7tm_2	e9p3nC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: 7tm_2	ECOD (v295.2)
C [auth B]	7tm_2	e9p3nB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: 7tm_2	ECOD (v295.2)
B [auth D]	7tm_2	e9p3nD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: 7tm_2	ECOD (v295.2)
A	EFG_C	e9p3nA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: EFG_C	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B [auth D], C [auth B], D [auth C]	PF18139	SLOG in TRPM (LSDAT_euk)	SLOG in TRPM	Family in the SLOG superfamily, found in several eukaryotic channels including diverse ciliate channels and the TRPM class of animal ion channels. Positioned near the N-terminus of all TRPM channels, it is predicted to play a regulatory role for the ...	Family in the SLOG superfamily, found in several eukaryotic channels including diverse ciliate channels and the TRPM class of animal ion channels. Positioned near the N-terminus of all TRPM channels, it is predicted to play a regulatory role for the channel in potentially recognizing a universal nucleotide or nucleotide-derived ligand [1].	Domain
A, B [auth D], C [auth B], D [auth C]	PF25508	TRPM2-like domain (TRPM2)	TRPM2-like domain	This domain is found in human Transient receptor potential cation channel subfamily M member 2 (TRPM2) and similar proteins. TRPM2 is a nonselective, voltage-independent cation channel that mediates Na+ and Ca2+ influx, leading to increased cytoplasm ...	This domain is found in human Transient receptor potential cation channel subfamily M member 2 (TRPM2) and similar proteins. TRPM2 is a nonselective, voltage-independent cation channel that mediates Na+ and Ca2+ influx, leading to increased cytoplasmic Ca2+ levels. It plays a role in mediating behavioural and physiological responses to moderate heat, insulin secretion, dendritic cell differentiation and maturation and the the regulation of the reorganisation of the actin cytoskeleton and filopodia formation. This domain is found associated with Pfam:PF00520 and adopts an all-alpha configuration.	Domain
A, B [auth D], C [auth B], D [auth C]	PF00520	Ion transport protein (Ion_trans)	Ion transport protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth D], C [auth B], D [auth C]	Green fluorescent protein,Transient receptor potential cation channel subfamily M member 5	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding calcium channel activity monoatomic cation transmembrane transporter activity monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity cation binding ion binding binding calcium ion binding metal ion binding small molecule binding calcium channel activity monoatomic cation transmembrane transporter activity monoatomic ion channel activity monoatomic cation channel activity passive transmembrane transporter activity calcium ion transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity calcium-activated cation channel activity gated channel activity monoatomic ion-gated channel activity ligand-gated channel activity ligand-gated monoatomic ion channel activity ligand-gated monoatomic cation channel activity identical protein binding protein binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth D], C [auth B], D [auth C]	IPR005821	Ion transport domain	Domain
A, B [auth D], C [auth B], D [auth C]	IPR057366	TRPM-like domain	Domain
A, B [auth D], C [auth B], D [auth C]	IPR041491	TRPM, SLOG domain	Domain
A, B [auth D], C [auth B], D [auth C]	IPR050927	Transient receptor potential cation channel subfamily M	Family
A, B [auth D], C [auth B], D [auth C]	IPR002153	Transient receptor potential channel, canonical	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.