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 9TRS | pdb_00009trs

Structure of the Plant mitochondrial pre-initiation complex 2, (SSU,mtIF3,mRNA)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 2]18S rRNA---
D [auth A]Ribosomal protein S2
E [auth B]Small ribosomal subunit protein uS3m
F [auth C]Ribosomal protein S4 - -
H [auth E]bS6m
I [auth F]Small ribosomal subunit protein uS7m---
J [auth G]40S ribosomal protein S15a
L [auth I]Small ribosomal subunit protein uS10 domain-containing protein
O [auth L]uS13m
Q [auth N]Small ribosomal subunit protein uS15c
S [auth P]Small ribosomal subunit protein uS17c---
T [auth Q]Small ribosomal subunit protein bS18c
X [auth U]mS23---
Z [auth W]Small ribosomal subunit protein mS29 -
BA [auth Y]MOSC domain-containing protein---
FA [auth c]Small ribosomal subunit protein mS38---
GA [auth d]IGR domain-containing protein- - -
HA [auth e]mS45-
IA [auth f]mS47 -
KA [auth h](rape) hypothetical protein---
MA [auth k]RRM domain-containing protein - -
NA [auth l]Small ribosomal subunit protein mS80 (rPPR6) -
G [auth D]S5 DRBM domain-containing protein
LA [auth i]PROP1-like PPR domain-containing protein- - -
JA [auth g]Small ribosomal subunit protein mS81 (rPPR8)
EA [auth b]IMS import disulfide relay-system CHCH-CHCH-like Cx9C domain-containing protein
DA [auth a]Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein---
C [auth 8]Translation initiation factor IF3-1, mitochondrial
CA [auth Z]Mitochondrial 28S ribosomal protein S34---
AA [auth X]BnaC06g06470D protein - -
Y [auth V]mS26- - -
W [auth T]30S ribosomal protein S31, mitochondrial-
V [auth S]Ribosomal protein S21
U [auth R]Small ribosomal subunit protein uS19m
B [auth 6]mRNA---
R [auth O]30S ribosomal protein S16
P [auth M]Small ribosomal subunit protein uS14m
N [auth K]Small ribosomal subunit protein uS12m
M [auth J]Ribosomal protein S11---
K [auth H]30S ribosomal protein S9---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth A]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
D [auth A]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
D [auth A]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
D [auth A]IPR001865Small ribosomal subunit protein uS2Family
E [auth B]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
E [auth B]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
E [auth B]IPR044954Small ribosomal subunit protein uS3m, plantFamily
E [auth B]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
F [auth C]IPR002942RNA-binding S4 domainDomain
F [auth C]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
F [auth C]IPR022801Small ribosomal subunit protein uS4Family
H [auth E]IPR000529Small ribosomal subunit protein bS6Family
H [auth E]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
H [auth E]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
J [auth G]IPR000630Small ribosomal subunit protein uS8Family
J [auth G]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
J [auth G]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
L [auth I]IPR001848Small ribosomal subunit protein uS10Family
L [auth I]IPR027486Small ribosomal subunit protein uS10 domainDomain
L [auth I]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
O [auth L]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
O [auth L]IPR001892Small ribosomal subunit protein uS13Family
O [auth L]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
O [auth L]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
Q [auth N]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
Q [auth N]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
Q [auth N]IPR000589Small ribosomal subunit protein uS15Family
T [auth Q]IPR001648Small ribosomal subunit protein bS18Family
T [auth Q]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
Z [auth W]IPR019368Small ribosomal subunit protein mS29Family
GA [auth d]IPR019083Small ribosomal subunit protein mS41, SAM domainDomain
HA [auth e]IPR052851Small ribosomal subunit protein mS75Family
IA [auth f]IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
IA [auth f]IPR032259Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H typeFamily
IA [auth f]IPR045004Enoyl-CoA hydratase/isomerase domainDomain
MA [auth k]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
MA [auth k]IPR052462SRA stem-loop-interacting RNA-binding protein/Glycine-rich RNA-binding-likeFamily
MA [auth k]IPR000504RNA recognition motif domainDomain
MA [auth k]IPR035979RNA-binding domain superfamilyHomologous Superfamily
NA [auth l]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
NA [auth l]IPR002885Pentatricopeptide repeatRepeat
G [auth D]IPR000851Small ribosomal subunit protein uS5Family
G [auth D]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
G [auth D]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
G [auth D]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
G [auth D]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
LA [auth i]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
LA [auth i]IPR002885Pentatricopeptide repeatRepeat
LA [auth i]IPR033443PROP1-like, PPR domainDomain
JA [auth g]IPR057027Mitochondrial 15S rRNA processing factor CCM1-like, TPR repeatsDomain
JA [auth g]IPR044578Pentatricopeptide repeat-containing protein BIR6-likeFamily
JA [auth g]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
JA [auth g]IPR002885Pentatricopeptide repeatRepeat
EA [auth b]IPR009069Cysteine alpha-hairpin motif superfamilyHomologous Superfamily
EA [auth b]IPR017264Small ribosomal subunit protein mS37, fungal-typeFamily
EA [auth b]IPR031731IMS import disulfide relay-system, CHCH-CHCH-like Cx9CDomain
C [auth 8]IPR036787Translation initiation factor 3 (IF-3), N-terminal domain superfamilyHomologous Superfamily
C [auth 8]IPR001288Translation initiation factor 3Family
C [auth 8]IPR019814Translation initiation factor 3, N-terminalDomain
C [auth 8]IPR036788Translation initiation factor 3 (IF-3), C-terminal domain superfamilyHomologous Superfamily
AA [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
AA [auth X]IPR061811Domain of unknown function DUF8750Domain
AA [auth X]IPR000504RNA recognition motif domainDomain
AA [auth X]IPR034823CID8-like protein, RNA recognition motif 1Domain
AA [auth X]IPR009818PAM2 motifConserved Site
AA [auth X]IPR035979RNA-binding domain superfamilyHomologous Superfamily
AA [auth X]IPR034825CID8-like protein, RNA recognition motif 2Domain
W [auth T]IPR044695Small ribosomal subunit protein bTHXc/bTHXc, plantFamily
W [auth T]IPR030826Small ribosomal subunit protein bTHX/bTHXc/bTHXmFamily
V [auth S]IPR001911Small ribosomal subunit protein bS21Family
U [auth R]IPR005732Small ribosomal subunit protein uS19, bacteriaFamily
U [auth R]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
U [auth R]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
U [auth R]IPR000504RNA recognition motif domainDomain
U [auth R]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
U [auth R]IPR002222Small ribosomal subunit protein uS19Family
U [auth R]IPR035979RNA-binding domain superfamilyHomologous Superfamily
U [auth R]IPR048289NsCP33-like, RNA recognition motif 2Domain
R [auth O]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
R [auth O]IPR000307Small ribosomal subunit protein bS16Family
P [auth M]IPR001209Small ribosomal subunit protein uS14Family
P [auth M]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
N [auth K]IPR006032Small ribosomal subunit protein uS12Family
N [auth K]IPR005679Ribosomal protein uS12, bacteriaFamily
N [auth K]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily