9YED | pdb_00009yed

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth CP1], D [auth DP1]	PF00691	OmpA family (OmpA)	OmpA family	-	Family
B [auth BP1], F [auth FP1]	PF18393	MotY N-terminal domain (MotY_N)	MotY N-terminal domain	The bacterial flagellar motor is a rotary motor complex composed of various proteins. MotX and MotY are essential for the Na+-driven flagellar motor motility of Vibrio, Shewanella and Aeromonas species. MotY is main component for T-ring formation and ...	The bacterial flagellar motor is a rotary motor complex composed of various proteins. MotX and MotY are essential for the Na+-driven flagellar motor motility of Vibrio, Shewanella and Aeromonas species. MotY is main component for T-ring formation and absence of MotY completely disrupt the T-ring formation [1]. This is the N-terminal domain of MotY which is shown to be essential for motility and responsible for the interaction with both MotX and the basal body. Functional analysis suggests that MotY-N connects the basal body to MotX and that the PomA/PomB complex associates with MotX to form the functional stator complex around the rotor. MotY-N alone does not associate strongly with the basal body, but the partial T-ring structure made of the MotY-N/MotX complex is sufficient to allow at least a few PomA/PomB stator complexes to be incorporated into the motor [2].	Domain
B [auth BP1], F [auth FP1]	PF00691	OmpA family (OmpA)	OmpA family	-	Family
A [auth AP1], E [auth EP1]	PF08238	Sel1 repeat (Sel1)	Sel1 repeat	-	Repeat

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth CP1], D [auth DP1]	Chemotaxis protein PomB	-	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum stator complex bacterial-type flagellum basal body protein-containing complex bacterial-type flagellum motor plasma membrane protein complex membrane plasma membrane membrane protein complex cell periphery cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum
B [auth BP1], F [auth FP1]	Sodium-type flagellar protein MotY	-	-	cell outer membrane cellular anatomical structure external encapsulating structure extracellular region membrane cell envelope outer membrane
A [auth AP1], E [auth EP1]	Sodium-type flagellar protein MotX	-	-	-

Chains	Accession	Name	Type
C [auth CP1], D [auth DP1]	IPR006665	OmpA-like domain	Domain
C [auth CP1], D [auth DP1]	IPR025713	Motility protein B-like, N-terminal domain	Domain
C [auth CP1], D [auth DP1]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
C [auth CP1], D [auth DP1]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
B [auth BP1], F [auth FP1]	IPR041544	MotY N-terminal domain	Domain
B [auth BP1], F [auth FP1]	IPR006665	OmpA-like domain	Domain
B [auth BP1], F [auth FP1]	IPR050330	Bacterial Outer Membrane Structural/Functional	Family
B [auth BP1], F [auth FP1]	IPR036737	OmpA-like domain superfamily	Homologous Superfamily
A [auth AP1], E [auth EP1]	IPR050767	Sel1/AlgK	Family
A [auth AP1], E [auth EP1]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A [auth AP1], E [auth EP1]	IPR006597	Sel1-like repeat	Repeat

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.